Jatropha Genome Database

JcCA0152731.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0152731.20 + phase: 0 
         (205 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29742.m001385 conserved hypothetical protein                          302   8e-83

>29742.m001385 conserved hypothetical protein
          Length = 233

 Score =  302 bits (773), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 154/228 (67%), Positives = 169/228 (74%), Gaps = 38/228 (16%)

Query: 4   KTMGTVSATTPWKQLLIRALESNSHLKHSSFFQL-------------------------- 37
           KTM  V+AT PWKQLL+ ALESNSHL+HSSFFQL                          
Sbjct: 18  KTMA-VTATAPWKQLLLSALESNSHLRHSSFFQLVRLFIISASMFFIGQLLSLRLSLRFQ 76

Query: 38  ATVGSDGRPSNRTVVFRGFEENSDKIQINTDTRTRKVEELKQCPFAEICWYFTDSWEQFR 97
           AT+GSDGRPSNRTVVFRGF E SDKIQINTD+RTRK           ICWYFTDSWEQFR
Sbjct: 77  ATIGSDGRPSNRTVVFRGFVERSDKIQINTDSRTRK-----------ICWYFTDSWEQFR 125

Query: 98  INGRVDVIDGSNLDSVKLQLREKSWYDSSIKSRMQYLGPNPGLPCLNERPSNEFFLDPSS 157
           INGRVDVIDGS+ D VKL+LREKSW+ SSIKSR+QYLGPNPGLPCL E+  +E FLDPSS
Sbjct: 126 INGRVDVIDGSDPDPVKLELREKSWFASSIKSRLQYLGPNPGLPCLTEQHPSELFLDPSS 185

Query: 158 GPVAPFCLLIVDPEQVDYLNLKSNQRIMFTFTQNANGENCWNSVRINP 205
           GPVA FCLL++DPEQVDYLNLKS+QR +FT  Q  NGEN WNS  INP
Sbjct: 186 GPVAAFCLLVLDPEQVDYLNLKSSQRTIFTIGQRVNGENSWNSESINP 233