Jatropha Genome Database

JcCA0152411.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0152411.20 + phase: 0 
         (209 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30076.m004678 conserved hypothetical protein                          372   e-104
30074.m001413 conserved hypothetical protein                           58   4e-09

>30076.m004678 conserved hypothetical protein
          Length = 209

 Score =  372 bits (954), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 181/209 (86%), Positives = 186/209 (88%)

Query: 1   MGWLTRFLAAVAFLAIGVIFSPETFGSKSVSQLSTYLKLAHLLSFSTAFGAALWVTFIGG 60
           MGWLTRF+AAVAFLAIG+IFSPETFGSKSV QLSTYLKLAHLL FSTAFGAALWVTFIGG
Sbjct: 1   MGWLTRFVAAVAFLAIGIIFSPETFGSKSVGQLSTYLKLAHLLCFSTAFGAALWVTFIGG 60

Query: 61  IIMFKNLPRHQFGNLQSKMFPAYFWLVGVCCATSVGSFGYLHPWKSASTAEKYQLGXXXX 120
           IIMFKNLPRHQFGNLQSKMFPAYFWLVGVCCA  V SFGYLHPWKSASTAEKYQLG    
Sbjct: 61  IIMFKNLPRHQFGNLQSKMFPAYFWLVGVCCAICVASFGYLHPWKSASTAEKYQLGFLLS 120

Query: 121 XXXXXXXXXXVFTPMTIEMMRQRHKVEREENIGTEVGWSKNQEAAKTNPKLAAMNKKFGM 180
                     VFTPMTIEMM+QRHKVERE+NIG EVGWSKNQE AKTNPKLAAMNKK GM
Sbjct: 121 SLAFNLANLFVFTPMTIEMMKQRHKVEREQNIGEEVGWSKNQEIAKTNPKLAAMNKKLGM 180

Query: 181 IHGFSSLANIMSFGGLAMHSWYLAGKLNL 209
           IHGFSSLANIMSFG LAMHSWYLAGK+NL
Sbjct: 181 IHGFSSLANIMSFGSLAMHSWYLAGKMNL 209


>30074.m001413 conserved hypothetical protein
          Length = 494

 Score = 57.8 bits (138), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 49/199 (24%), Positives = 87/199 (43%), Gaps = 28/199 (14%)

Query: 29  SVSQLSTYLKLAHLLSFSTAFGAALWVTFIGGIIMFKNLPRHQFGNLQSKMFPAYFWLVG 88
           S   + + + + +LL F+TA+G ++WVTFI   ++   L RHQFG +QSK++P YF  + 
Sbjct: 296 STEGVKSLMGVINLLGFATAYGMSVWVTFISSYVLANALTRHQFGVVQSKIYPVYFRAMA 355

Query: 89  VCCATSVGSFGYLHPWKS---ASTAEKYQLGXXXXXXXXXXXXXXVFTPM-TIEMMRQRH 144
              +  V   G+L   ++   +  AE +Q+                  P+ T E  R R 
Sbjct: 356 Y--SIGVALLGHLVGHRNLAFSRKAEMFQVFNLIASISAVLTNAIYLEPLATKEEGRGRE 413

Query: 145 KVEREENIGTE-------------------VGWSKNQEAAKTNPKLAAMNKKFGMIHGFS 185
            +  E N G +                       +N E  +T  ++  +N++   ++  S
Sbjct: 414 NLAAESNKGEQEQLLRDVPAATAAGAAEATTATRENTEQQETKSRMVRLNER---LNSCS 470

Query: 186 SLANIMSFGGLAMHSWYLA 204
           S  N+++   L  H  YL+
Sbjct: 471 SFLNVVTLMSLTWHLVYLS 489