Jatropha Genome Database

JcCA0152411.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0152411.10 - phase: 0 /partial
         (958 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30076.m004677 DNA replication regulator dpb11, putative               963   0.0  
29980.m000179 ubiquitin-protein ligase, putative                       78   2e-14
29648.m001981 topbp1, putative                                         60   5e-09

>30076.m004677 DNA replication regulator dpb11, putative
          Length = 1069

 Score =  963 bits (2489), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 539/1018 (52%), Positives = 660/1018 (64%), Gaps = 115/1018 (11%)

Query: 2   LDSNSPSKTFLGVRFVLFGFDSIHERQVRAKLLNGGGVDAGQYSQSCSHLIVDKIVYDDP 61
           +++ SPSKTFLGVRFVLFGFD I+ RQVRAKL++GGGVDAGQY+++C+H+IVDKIVY+DP
Sbjct: 1   METASPSKTFLGVRFVLFGFDPINLRQVRAKLIDGGGVDAGQYNENCTHVIVDKIVYNDP 60

Query: 62  LCVAARNDGKTLVTALWVDHSCDIGMAVDATSIMYRPPRDLNGIPGAKHLIMCLTGYQRQ 121
           +C+AARND KTLVT LWVDHS DIG+ VDATSIMYRP RDLNGIPGAK LIMCLTGYQRQ
Sbjct: 61  ICIAARNDRKTLVTGLWVDHSYDIGLVVDATSIMYRPLRDLNGIPGAKSLIMCLTGYQRQ 120

Query: 122 DRDDIMTMVSLMGAQFSKPLVANKVTHLICYKFEGEKYELASKLKKIKLVNHRWLEDCLR 181
           DRDDIMTMVSLMGAQFSKPLVANKVTHLICYKFEGEKYELA+KLKKIKLVNHRWLEDCLR
Sbjct: 121 DRDDIMTMVSLMGAQFSKPLVANKVTHLICYKFEGEKYELANKLKKIKLVNHRWLEDCLR 180

Query: 182 DWELLPEDNYNKSGYEMEMMEAEAKDSEEDVEDITVKQSSHQITYKSPHLKISTPKPCQL 241
           DWELLPEDNY+KSGYE+EMMEAEAKDSEED  +   KQ S ++  KSPHLKI TPKPCQL
Sbjct: 181 DWELLPEDNYSKSGYELEMMEAEAKDSEEDTGETIDKQPSRKMENKSPHLKIGTPKPCQL 240

Query: 242 PKSTGELPKMPQILSEPEGLPSAVN-KDMLLTPGRKHRIDTAVGIDNTCVSEVLACQVSG 300
            +ST E+P M   L+EPEG PS  N K +L+TP  K+R + A G D+ C+  V ACQ   
Sbjct: 241 SRSTVEVPNMSHNLNEPEGFPSVANMKGILITPSGKNRDNHASGFDSNCIPAVPACQ-DA 299

Query: 301 ASNDAISVGLPDLQDRTPKSTKGCSDLESIPRSANKSNSDARFIAVSYVRKTPRKXXXXX 360
            ++   SVGLP+ Q+RTP    G +DLE++ RSA +     +F  + Y R T +K     
Sbjct: 300 RTSIGTSVGLPNPQERTPNPRNGDNDLETVSRSAERPYLGTKFSGMGYTRNTSQK----- 354

Query: 361 XXXXXXGELDTKGSPKVQFSESILSGELGNVKGSPKLQFGESINMPSSKFEFAEEASVA- 419
                        SP      S+ SGE    +GS K+Q GESIN+ +S+ E+A +   + 
Sbjct: 355 -------------SP-----SSVFSGESSYNRGSSKMQLGESINISTSRVEYANDVLKSS 396

Query: 420 -------GSPL--------------ISCN-------------------------QGLEPA 433
                  GS L              +SC+                         QGLEP 
Sbjct: 397 RSEDLQKGSELFYNEASSSKKQKMNVSCSNLGYQNVNNEAKLNMERSPSVSGKTQGLEPV 456

Query: 434 SLVDGLSKFSKHSPLGSGKHDNSMDDIVTVNAAQELNVDAXXXXXXXXXXXPFTEGLLFP 493
           SLVDG +  +         HD   DDIV+ +AA++L+VD            P  +G LF 
Sbjct: 457 SLVDGTNSLT-----APRNHDCFRDDIVSTDAAKKLHVDVSTAKLSKLEKEPIPQGQLFS 511

Query: 494 ESTAPEPEQNEGVKEKTPQTSFIGLGKSSLFDKSDDRDFGVEKSDLVVSDAVLPQHQQQD 553
           E+  P P Q + V E+TPQTSF GL KSS   KS   DF VEKS+ VV++A  P HQQQD
Sbjct: 512 ENATPGPGQYKIVNERTPQTSFKGLMKSSSASKSKGGDFEVEKSEYVVAEAGRPCHQQQD 571

Query: 554 KQVPSSFEGKSETEKCQTSDNLEELHEGNRNLVTKQGRKKTIARKTLGSRPKLNSTANQK 613
           KQ PS   GKSE EK +T  ++EEL EG  NL++K GRKKTIA++TLGS PK  +T+N+K
Sbjct: 572 KQDPSPSNGKSEMEKSRTISSMEELQEGTGNLISKPGRKKTIAKRTLGSGPKSKNTSNRK 631

Query: 614 GSIYSNIVSLQNDLTIVLPGERTDHEKLYSANEPETSPDTFNVSAINEADKKNCTRTGDS 673
           G I  N  + QND  + L GER ++EK  +ANE + S +T NV+ + EA+     +  +S
Sbjct: 632 GFIALNKAAAQNDPAVDLSGERANYEKSSNANELQRSTETVNVTGVKEAETVVSAKPNES 691

Query: 674 FEIETNFMDDETEASEDK-------------AVDLSHKADNEMELKQEGALHTTNDAASG 720
              ETN+MD+ETEA EDK              VDL H+ADN ME++QEGA    N+ A  
Sbjct: 692 ---ETNYMDEETEALEDKDGHEDVLDDEKAGMVDLPHQADNMMEIEQEGAQRIINNVAGV 748

Query: 721 MEESGKEEKIAADQLQQKDESTCKVNGLKGKVSKGKRQPSGKARTKTKTVPPVPEQAKAT 780
           M++  +EE      LQQK+  TC+ +G+KGKVSKG++Q SGK  TK +TVP V ++A++ 
Sbjct: 749 MDDCSREE-TDTTHLQQKE--TCQESGVKGKVSKGRKQASGK--TKKETVPLVSKKAES- 802

Query: 781 EDLQGKDICKGNVEEKAIERXXXXXXXXXXXXXRNVDGXXXXXXXXXXXXXXPIEGGGQD 840
                         E A+++             R V G              PI    Q+
Sbjct: 803 --------------ESAMKKEKGKRCSAGHSKSRLVSGKHSESSMEVEKENNPITDEDQN 848

Query: 841 INQPREPLGKTMVKSDKVSLKVKQKSWKNNPNCTPVREVSKQVKTEPVWFILSGHKLQRK 900
           I++ +   GK   K DKVS+K+KQKS  +N N T   E+ K +KTEPVWFILSGH+LQRK
Sbjct: 849 ISEAKVHDGKG-AKLDKVSMKIKQKSRTSNSNYTSA-EILKHMKTEPVWFILSGHRLQRK 906

Query: 901 EFQQVIRRLKGKVCRDSHQWSYQATHFITPDPIRRTEKFFAAAASGRWILKTDYLTAC 958
           EFQQVIRRLKGK CRDSHQWSYQATHFI PDPIRRTEK FAAAASGRWILKTDYLTAC
Sbjct: 907 EFQQVIRRLKGKFCRDSHQWSYQATHFIAPDPIRRTEKLFAAAASGRWILKTDYLTAC 964


>29980.m000179 ubiquitin-protein ligase, putative
          Length = 460

 Score = 77.8 bits (190), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 36/95 (37%), Positives = 62/95 (65%), Gaps = 2/95 (2%)

Query: 105 IPGAKHLIMCLTGYQRQDRDDIMTMVSLMGAQFSKPLVANKVTHLICYKFEGEKYELASK 164
           I G + ++  ++GY   +R +++ ++S  GA +   + +  +THL+C+KFEG KYELA K
Sbjct: 5   IEGMEKVVATVSGYHGTERFNLIKLISHSGASYVGAM-SRSITHLLCWKFEGRKYELAMK 63

Query: 165 LKKIKLVNHRWLEDCLRDWELLPEDNYN-KSGYEM 198
            K+  +VNHRW+EDC++  + + E  Y  +SG E+
Sbjct: 64  FKETIIVNHRWIEDCIKQGKRVSEHPYMLQSGSEV 98


>29648.m001981 topbp1, putative
          Length = 950

 Score = 60.1 bits (144), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 66/133 (49%), Gaps = 7/133 (5%)

Query: 61  PLCVAARNDGKTLVTALWVDHSC--DIGMAVDATSIMYRPPRDLNGIPGAKHLIMCLTGY 118
           P C+       T V++ WV  SC  D  +      I+Y P      +PG ++   C++ Y
Sbjct: 586 PRCMGGSQ--TTYVSSHWV-RSCLEDESLLDVGGHIIYSPLPCQIPLPGFENFRFCISQY 642

Query: 119 QRQDRDDIMTMVSLMGAQFSKPLVANKVTHLICYKFEGEKYELASKLKKIKLVNHRWLED 178
           + +DR  +  +  ++GA+F + L   KVTHL+C    G KYE A K   I  +   W+ +
Sbjct: 643 EEKDRLLLRNLCFVLGAKFVEKL-TRKVTHLLCKFTNGPKYEAACKW-GICSITSEWIYE 700

Query: 179 CLRDWELLPEDNY 191
           C+R  E++  D +
Sbjct: 701 CVRQNEVVALDRF 713