Jatropha Genome Database

JcCA0152031.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0152031.30 + phase: 0 
         (188 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30170.m013709 conserved hypothetical protein                          232   7e-62

>30170.m013709 conserved hypothetical protein
          Length = 181

 Score =  232 bits (592), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 112/167 (67%), Positives = 136/167 (81%), Gaps = 1/167 (0%)

Query: 19  MDKWDHLQSRLLSQFINASSIISRLQVIRDSNNYGNLSGVDGIVDAVLRKQMDSLETILL 78
           M+KWD+ QSRL+SQF NASSII RLQ+IR+SNNYG+L+ V GI D V+RKQM+SL+TIL+
Sbjct: 1   MEKWDNFQSRLVSQFRNASSIIDRLQMIRESNNYGSLNCVGGIADVVMRKQMESLQTILI 60

Query: 79  SMNKTLEDFRSIVLFLEKMYKDGRQLVK-GGPNQLTTKQLQQRVGVKPCLADCLDGLMIL 137
           S+NKTL++F+ IV+ LE+M++DG+QLV+ GG N LT KQLQQRVG+KPCLADCLDGLMIL
Sbjct: 61  SINKTLDEFQGIVMILERMHRDGKQLVQGGGSNHLTAKQLQQRVGIKPCLADCLDGLMIL 120

Query: 138 HDMHRSEYXXXXXXXXXXXXXXXXPSSGDLAALQQLMVDQPNIPKEE 184
            DMHRSEY                PSS DLAALQQL+VDQPNIP+EE
Sbjct: 121 RDMHRSEYLLKSSLVSALPALVLKPSSSDLAALQQLLVDQPNIPREE 167