Jatropha Genome Database

JcCA0152031.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0152031.20 - phase: 0 
         (229 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30170.m013793 conserved hypothetical protein                          250   5e-67

>30170.m013793 conserved hypothetical protein
          Length = 212

 Score =  250 bits (638), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 143/227 (62%), Positives = 164/227 (72%), Gaps = 17/227 (7%)

Query: 1   MEEEKEEIGFDIGXXXXXXXXXXXXXXXXXXXXXSVGDDNVLRFLDSMDSYLTLFDSLSH 60
           MEEEK+E+GF+IG                        DDNVL+FLDS+DSYLTLFDSLS 
Sbjct: 1   MEEEKKEVGFEIGTEKLKLEEEEEEDKQQEEQDI---DDNVLQFLDSVDSYLTLFDSLSS 57

Query: 61  TLRQGWLELAGARHSMGASRINSALLDLKVHSASTLLQVSEGHDSMEEQPHFILRKWGSL 120
           TLRQGWLELA ARHSMGA R+NS+LLDLK H AST LQ+++ H   E +P FILRKW SL
Sbjct: 58  TLRQGWLELASARHSMGALRLNSSLLDLKSHPASTSLQLTKHH---EGEPQFILRKWLSL 114

Query: 121 -DCSRYQNSKEGELQAKPGSPRLRQRGNSQVSEEITSPKQAALKVDDQVQKERSRSLSVF 179
            DC   QN+ + +L  K G+P        Q+SEE TSPKQA+ K DD+VQKERSRSLSVF
Sbjct: 115 GDCDE-QNTND-DLLEKSGTP--------QLSEEETSPKQASSKADDKVQKERSRSLSVF 164

Query: 180 GTLVSPKLRDAQLSFETALETIVEIANMRSEMLSAFDGVNKELRVAK 226
           GTLVSPKLR AQLSFETALET+VEIANMRS MLSAFD V++EL   K
Sbjct: 165 GTLVSPKLRAAQLSFETALETVVEIANMRSAMLSAFDRVHEELNAPK 211