Jatropha Genome Database

JcCA0151971.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0151971.10 + phase: 0 /partial/short
         (49 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30190.m011226 UDP-n-acetylmuramoylalanyl-d-glutamate--2,6-diamin...    68   8e-13

>30190.m011226
           UDP-n-acetylmuramoylalanyl-d-glutamate--2,
           6-diaminopimelate ligase, putative
          Length = 780

 Score = 68.2 bits (165), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 32/49 (65%), Positives = 33/49 (67%)

Query: 1   VVAGKGHETYQIXXXXXXXXXXXXXXXXALQYVDELHQAGIDTSEFPWR 49
           V+AGKGHETYQI                ALQYVDELHQAGIDTSEFPWR
Sbjct: 724 VIAGKGHETYQIEGDKKEFFDDREECREALQYVDELHQAGIDTSEFPWR 772