Jatropha Genome Database

JcCA0150921.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0150921.10 + phase: 0 
         (259 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30073.m002314 conserved hypothetical protein                          480   e-136

>30073.m002314 conserved hypothetical protein
          Length = 257

 Score =  480 bits (1236), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 223/240 (92%), Positives = 231/240 (96%)

Query: 4   TMTNGEIHTVSTNGGITIEKPFKIFVGYDPREDIAYEVCHHSIMKRSSIPVEICPIIQSE 63
           TMTNGE+HTVS NGG+T  K FK FVGYDPREDIAY+VC HSI+KRSSIPVEI PIIQSE
Sbjct: 2   TMTNGEVHTVSANGGLTSNKSFKFFVGYDPREDIAYQVCRHSILKRSSIPVEIIPIIQSE 61

Query: 64  LRKKNLYWRERGKLESTEFSFSRFLTPYLANYEGWAMFVDCDFLYLADIKELRDLIDDKY 123
           LRKKNLYWRERG+LESTEFSFSRFLTPYLANYEGWA+FVDCDFLYLAD+KELRDLIDDKY
Sbjct: 62  LRKKNLYWRERGQLESTEFSFSRFLTPYLANYEGWAVFVDCDFLYLADVKELRDLIDDKY 121

Query: 124 AIMCVQHDYTPKETTKMDGAVQTVYPRKNWSSMVLYNCGHPKNKVLTPEVVNTQTGAFLH 183
           AIMCVQHDYTPKETTKMDGAVQTVYPRKNWSSMVLYNCGHPKNKVLTPEVVN QTGAFLH
Sbjct: 122 AIMCVQHDYTPKETTKMDGAVQTVYPRKNWSSMVLYNCGHPKNKVLTPEVVNAQTGAFLH 181

Query: 184 RFQWLEDEDIGSIPFVWNFLEGHNKVVEGDTTTFPKAIHYTRGGPWFDAWKNCEFADLWL 243
           RFQWLEDEDIGSIPFVWNFLEGHNKVVEGD TTFPKAIHYTRGGPWF+AWKNCEFADLWL
Sbjct: 182 RFQWLEDEDIGSIPFVWNFLEGHNKVVEGDATTFPKAIHYTRGGPWFEAWKNCEFADLWL 241