Jatropha Genome Database

JcCA0150831.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0150831.20 + phase: 0 /pseudo/partial/short
         (48 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30140.m000572 conserved hypothetical protein                           66   4e-12

>30140.m000572 conserved hypothetical protein
          Length = 193

 Score = 65.9 bits (159), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 27/37 (72%), Positives = 31/37 (83%)

Query: 1   FGLTDPPVANDIFQCMNHGRSTIAGRFAPYSEKCMGK 37
           FG + PPVAN+IF CMN GRS +AGRFAP+ EKCMGK
Sbjct: 97  FGQSHPPVANEIFDCMNCGRSIMAGRFAPHLEKCMGK 133