Jatropha Genome Database

JcCA0150751.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0150751.10 - phase: 0 
         (219 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29680.m001664 synovial sarcoma associated ss18 protein, putative      204   3e-53
27964.m000358 synovial sarcoma associated ss18 protein, putative       99   1e-21

>29680.m001664 synovial sarcoma associated ss18 protein, putative
          Length = 219

 Score =  204 bits (518), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 113/207 (54%), Positives = 119/207 (57%), Gaps = 2/207 (0%)

Query: 13  AAYYPNNVTTDHIQQYLDENKSLILKIVESQNSGKLSECAENQARLQRNLMYLAAIADSQ 72
           AAYYPNNVTTDHIQQYLDENKSLILKIVESQNSGK+SECAENQARLQRNLMYLAAIADSQ
Sbjct: 13  AAYYPNNVTTDHIQQYLDENKSLILKIVESQNSGKISECAENQARLQRNLMYLAAIADSQ 72

Query: 73  PQPPTMHTQFPSSGIMHPGXXXXXXXXXXXXTPQSLMAARSSMXXXXXXXXXXXXXXXXX 132
           PQPP MH+QF SSGIM PG            TPQS+MAARSSM                 
Sbjct: 73  PQPPNMHSQFSSSGIMQPGAHYMQHQQAQQMTPQSVMAARSSMLYTQQQYAALQQQQALH 132

Query: 133 XXXXXXXXXXXXXXXXXNEXXXXXXXXXXXXXXFPDFGRDAGGRGM--GSKQDIXXXXXX 190
                            +E              FPDFGRDA GRGM  GSKQD+      
Sbjct: 133 SQLGMSSGGSPGLHMLQSEASTAGGSGGLGAGGFPDFGRDASGRGMAGGSKQDMGNAGSG 192

Query: 191 XXXXXXXXXXXXXXXETLYLKSADDGN 217
                          E LYLKSAD+GN
Sbjct: 193 EGRGGNSGGQGSDGGENLYLKSADEGN 219


>27964.m000358 synovial sarcoma associated ss18 protein, putative
          Length = 212

 Score = 99.0 bits (245), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 46/69 (66%), Positives = 58/69 (84%)

Query: 14 AYYPNNVTTDHIQQYLDENKSLILKIVESQNSGKLSECAENQARLQRNLMYLAAIADSQP 73
          +Y P N+TT+ IQ+YLDENK LIL I+++QN GKL+ECA+ QA+LQ+NLMYLAAIAD+QP
Sbjct: 13 SYPPANITTEQIQKYLDENKKLILAILDNQNLGKLAECAQYQAQLQKNLMYLAAIADAQP 72

Query: 74 QPPTMHTQF 82
          Q PTM  Q 
Sbjct: 73 QAPTMPPQM 81