Jatropha Genome Database

JcCA0150341.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0150341.10 + phase: 0 /partial
         (112 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29830.m001424 Adipocyte plasma membrane-associated protein, puta...   119   3e-28
29739.m003743 Adipocyte plasma membrane-associated protein, puta...    45   5e-06

>29830.m001424 Adipocyte plasma membrane-associated protein,
           putative
          Length = 380

 Score =  119 bits (298), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 58/101 (57%), Positives = 72/101 (71%), Gaps = 1/101 (0%)

Query: 2   PDNIHYDGHGHFWIALPMEITTFWKAVFKYPFVRKLAGIVSKHIRNIGDTGKNGGVFVVD 61
           PDNIH DGHGHFWIAL    + F   V++YPF+RK   I S   +    +G N G++VVD
Sbjct: 277 PDNIHSDGHGHFWIALSSGNSAFVDLVYRYPFIRKFMAI-SIRFKGPVYSGNNAGLYVVD 335

Query: 62  LEGKLISHYYDPELKLISSGVKIGNHLYCGSIIDPYILRLN 102
           LEG  I+HYYD  L++ SSGV+IG+H+YCGSI  PYILRLN
Sbjct: 336 LEGNPIAHYYDHNLRMTSSGVRIGDHIYCGSIEAPYILRLN 376


>29739.m003743 Adipocyte plasma membrane-associated protein,
           putative
          Length = 356

 Score = 45.4 bits (106), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 32/105 (30%), Positives = 48/105 (45%), Gaps = 3/105 (2%)

Query: 2   PDNIHYDGHGHFWIALPMEITTFWKAVFKYPFVRKLAGIVSKHIRNIGDTGKNGGVFVVD 61
           PDNI+    G FWI L        + V      + L     K I  +    KN  V  V 
Sbjct: 249 PDNINLAPDGSFWICLLQVAADGLEFVHTSKASKHLVASFPKLIELVNGVEKNAMVVNVA 308

Query: 62  LEGKLISHYYDPELKLIS---SGVKIGNHLYCGSIIDPYILRLNL 103
            +GK+   + DP+ K++S   S V+   HLY GS+ + ++ +L L
Sbjct: 309 ADGKITRKFDDPDGKVVSFVTSAVEFDGHLYLGSLKNNFVGKLPL 353