Jatropha Genome Database

JcCA0150301.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0150301.10 - phase: 0 /partial
         (248 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29732.m000318 conserved hypothetical protein                          112   2e-25
29646.m001116 conserved hypothetical protein                           79   2e-15
30146.m003517 conserved hypothetical protein                           49   3e-06
29794.m003405 conserved hypothetical protein                           47   1e-05

>29732.m000318 conserved hypothetical protein
          Length = 368

 Score =  112 bits (279), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 52/156 (33%), Positives = 90/156 (57%), Gaps = 1/156 (0%)

Query: 23  PPRIQGFAMEFQS-DDQAWYDVKVSRNDDILTVKYVNFSEEFNETFHVGKFKTIDKVNDF 81
           PP    + +E+++  D AWY V+     + L +KY NF +E +  F    FK  +++  F
Sbjct: 12  PPLPSTYDVEYRAIADDAWYSVRTVVEGETLRIKYENFGDEHDSVFEPQNFKCAEEIEIF 71

Query: 82  KRRFRQSSVQLQDQDCHKIFQGKTVCASYNFNNGEVKFFDAMVVEVLNEKHKVGXXXXXC 141
           ++RFR  S QLQD++C K+  G  VCAS++F N + +F+D +V +V++  H+       C
Sbjct: 72  EKRFRPLSNQLQDKECKKLSVGTVVCASHSFTNLDNRFYDGVVDDVISRDHRFANGDEQC 131

Query: 142 SCTYVLKWHDGSLEGERTFAKISDICLTPPGNRVDP 177
            CT+V+ W  G + G  +  KI ++C+    +++DP
Sbjct: 132 MCTFVVVWRHGPIAGCLSNKKIENVCVVQSTSQLDP 167


>29646.m001116 conserved hypothetical protein
          Length = 116

 Score = 79.3 bits (194), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/134 (38%), Positives = 67/134 (50%), Gaps = 31/134 (23%)

Query: 31  MEFQS-DDQAWYDVKVSRNDDILTVKYVNFSEEFNETFHVGKFKTIDKVNDFKRRFRQSS 89
           MEFQ  +D AWYDV +  +   LTV Y NFSEE++E + V  F  ++++ +F+ RFR SS
Sbjct: 1   MEFQCPEDNAWYDVNLFCDGKELTVHYTNFSEEYDEKYDVDVFNNMEELEEFRARFRLSS 60

Query: 90  VQLQDQDCHKIFQGKTVCASYNFNNGEVKFFDAMVVEVLNEKHKVGXXXXXCS------- 142
           VQ+QD DC  I Q                     VVEVLNE+HK                
Sbjct: 61  VQIQDHDCKLICQ---------------------VVEVLNEEHKFKKQVGGGGGKKKKKK 99

Query: 143 --CTYVLKWHDGSL 154
             CTYV+ W  G L
Sbjct: 100 SVCTYVVTWQHGPL 113


>30146.m003517 conserved hypothetical protein
          Length = 285

 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 63/138 (45%), Gaps = 17/138 (12%)

Query: 35  SDDQAWYDVKVSRNDDILTVKYVNFSEEFNETFHVGKFKTIDKVNDFKRRFRQSSVQLQD 94
           S D AWYDV    N  +L+   +     F+     G   T D+  + KR  R+ S+ L+ 
Sbjct: 161 SRDNAWYDVAAFLNYRVLSTGELEARVRFS-----GFRNTDDEWVNVKRAVRERSIPLEP 215

Query: 95  QDCHKIFQGKTV-CASYNFNNGEVKFFDAMVVEVLNEKHKVGXXXXXCSCTYVLKW-HDG 152
            +CH++  G  V C    F+  +  + DA VV +    H+       C C +V+++ HD 
Sbjct: 216 SECHRVKVGDLVLCFRERFD--QAVYCDAHVVGIQRRPHEAA----SCRCIFVVRYDHDN 269

Query: 153 SLEGERTFAKISDICLTP 170
           + E     A++  +C  P
Sbjct: 270 TEEA----AQLERLCCRP 283


>29794.m003405 conserved hypothetical protein
          Length = 266

 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 66/153 (43%), Gaps = 23/153 (15%)

Query: 10  PHAYNLFNLLQEKPPRIQGFAMEFQ---SDDQAWYDVKVSRNDDILTVKYVNFSEEFNET 66
           P     FNL +          MEF+   S D AWYDV     D  L  +Y+   E     
Sbjct: 106 PKGEKAFNLSE----------MEFEARSSKDGAWYDV-----DMFLCHRYLPSGEAEVLV 150

Query: 67  FHVGKFKTIDKVNDFKRRFRQSSVQLQDQDCHKIFQGKTVCASYNFNNGEVKFFDAMVVE 126
             VG     D+  + K+  R+ SV L+  +CHK+  G  +C  +     +  ++DA V+ 
Sbjct: 151 RFVGFGAEEDEWVNIKKDVRERSVPLEHSECHKVQVGDLLCC-FQERRDQAIYYDAHVIG 209

Query: 127 VLNEKHKVGXXXXXCSCTYVLKWHDGSLEGERT 159
           +  + H +      C C +++++   + E  ++
Sbjct: 210 IQKKMHDI----RGCRCLFLIRYDHDNTEARKS 238