Jatropha Genome Database

JcCA0149621.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0149621.20 - phase: 2 /partial
         (286 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30027.m000845 Ubiquitin carboxyl-terminal hydrolase, putative         416   e-117

>30027.m000845 Ubiquitin carboxyl-terminal hydrolase, putative
          Length = 791

 Score =  416 bits (1068), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 208/271 (76%), Positives = 225/271 (83%), Gaps = 2/271 (0%)

Query: 15  SVHTDVNLTFCRTAGLTSFPDYLVLHMRKFVMEEGWVPKKLXXXXXXXXXXXXSHMRSRG 74
           S   +   T  +TAGLTSFP+YLVLHMRKFVMEEGWVPKKL            SHMRSRG
Sbjct: 522 STALNAKTTAEKTAGLTSFPEYLVLHMRKFVMEEGWVPKKLDVYIDVPDVIDISHMRSRG 581

Query: 75  LQPGEQLLPEGDPSDEVESKQLVANEDIVSQLVSMGFNYLHCQKAAINTLNTGVEEAMNW 134
           LQPGEQLLPEG    EVE+ ++VANEDIV QL SMGFN+L+CQKAAINT NTGVEEAMNW
Sbjct: 582 LQPGEQLLPEGVSGGEVEANKIVANEDIVFQLRSMGFNHLYCQKAAINTFNTGVEEAMNW 641

Query: 135 LLSHMDDPDIDVPISQGVLGTEVVDQSKVDTLISFGFQEELARKALKASGGDIEKATDWI 194
           LLSHMDDPDID PISQ   GTE+VDQSK+DTLISFGFQEE+ARKALKAS GDIEKATDWI
Sbjct: 642 LLSHMDDPDIDAPISQE--GTEIVDQSKIDTLISFGFQEEIARKALKASDGDIEKATDWI 699

Query: 195 FSNPDASVSSDMDATTSSNLPNPDDAGLPDGGGRYRLFGIVSHIGTSTQCGHYVAHVFKD 254
           F+NPDAS SSDMDATT S     DD  LPDGGGRY+LFGIVSH+GTSTQCGHYVAH+ K 
Sbjct: 700 FNNPDASASSDMDATTPSTTSTADDTVLPDGGGRYKLFGIVSHMGTSTQCGHYVAHILKG 759

Query: 255 GRWTIFNDNKVGASVNPPKDMGYLYFFERLD 285
           G+W IFND+KVG SVNPPKDMGYLYFFERLD
Sbjct: 760 GKWVIFNDDKVGVSVNPPKDMGYLYFFERLD 790