Jatropha Genome Database

JcCA0149501.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0149501.20 - phase: 0 /partial
         (106 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29578.m000201 conserved hypothetical protein                          189   2e-49

>29578.m000201 conserved hypothetical protein
          Length = 421

 Score =  189 bits (481), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 87/106 (82%), Positives = 99/106 (93%)

Query: 1   MTIIMNLYLWKLLQESIMPEDKKTKFLESEDSEFEKVIDFYLCSQSDVFVPAISGLFYAN 60
           + ++ +++     +ESIMPEDKKTKFL+SEDSEFEKVIDFY+CSQSDVFVPAISGLFYAN
Sbjct: 316 LNVLKDIFPKTYTKESIMPEDKKTKFLQSEDSEFEKVIDFYMCSQSDVFVPAISGLFYAN 375

Query: 61  VAGKRIASGKTQILVPANIPGTSASVTNHFSPYISKKNHLAYSCFC 106
           VAGKRIA+GKTQILVPA+IPG+SASVTNHFSPYISKKNHLAYSCFC
Sbjct: 376 VAGKRIAAGKTQILVPADIPGSSASVTNHFSPYISKKNHLAYSCFC 421