Jatropha Genome Database

JcCA0149441.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0149441.20 - phase: 0 /partial
         (81 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30147.m014113 conserved hypothetical protein                          139   3e-34

>30147.m014113 conserved hypothetical protein
          Length = 314

 Score =  139 bits (349), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 65/81 (80%), Positives = 71/81 (87%)

Query: 1   YDAAILHTSFARLLGHPKASHLEASNELQFFHELVARLNNRIKGSEAVISELWYVEEYDV 60
           YDAAILHTSFARLLGHPK S  E S EL+ FHELVARLNN+I+G  AV+SELWYVEEYDV
Sbjct: 234 YDAAILHTSFARLLGHPKDSPAEPSEELRLFHELVARLNNQIRGFVAVVSELWYVEEYDV 293

Query: 61  LALALNGRMNIRKFQLGCKTT 81
           LALAL+GRM +RKFQLGCK T
Sbjct: 294 LALALDGRMKVRKFQLGCKRT 314