Jatropha Genome Database

JcCA0149441.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0149441.10 - phase: 0 /pseudo/partial
         (315 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30147.m014112 DNA binding protein, putative                           274   4e-74
29711.m000322 DNA binding protein, putative                            69   4e-12
29830.m001386 DNA binding protein, putative                            68   5e-12

>30147.m014112 DNA binding protein, putative
          Length = 314

 Score =  274 bits (700), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 139/202 (68%), Positives = 148/202 (73%)

Query: 114 CHGKSKGKVPKGIHKAEREKLKREQXXXXXXXXXXXXXXTQPNNGKASILSEATKLLKDF 173
           C GK+KGKVPK IHKAEREKLKREQ              TQPNNGKASIL EA +LLKD 
Sbjct: 113 CPGKNKGKVPKRIHKAEREKLKREQLNDLFLDLADALDLTQPNNGKASILCEAARLLKDL 172

Query: 174 LVQIECLKKENASLLSESHYVTTEKNELKEENSVLQTQIEGLQSELEARMVQSKPDLNAP 233
             QIECLKKEN SLLSES YVT EKNEL+EEN  L+TQIE LQ ELEA+ VQSKPDLN P
Sbjct: 173 FGQIECLKKENESLLSESRYVTVEKNELREENLALETQIESLQGELEAKAVQSKPDLNMP 232

Query: 234 PPEFEQPELTSHFPGDSLRLPTADASLQQTSAVFVIPFHHDLQTYSVTASNVSKPHARYP 293
           PPE   PEL  HF G+SL LP AD   QQ  AVFV+P H  LQ Y  T +NVSKPHARY 
Sbjct: 233 PPELHHPELAPHFTGESLGLPVADGIPQQAPAVFVVPLHPSLQAYPRTTTNVSKPHARYA 292

Query: 294 NPADSWPSQLLGEQVTARKEVQ 315
            PADSWPSQLL EQ+T RKEVQ
Sbjct: 293 TPADSWPSQLLEEQLTIRKEVQ 314


>29711.m000322 DNA binding protein, putative
          Length = 316

 Score = 68.6 bits (166), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 38/101 (37%), Positives = 59/101 (58%)

Query: 128 KAEREKLKREQXXXXXXXXXXXXXXTQPNNGKASILSEATKLLKDFLVQIECLKKENASL 187
           KA+REKL+R++               +P N KA+IL++  +LLKD   Q+  LK E A+L
Sbjct: 39  KADREKLRRDRLNEHFIELGDALDPDKPKNDKATILTDTIQLLKDLTSQVNKLKVEYATL 98

Query: 188 LSESHYVTTEKNELKEENSVLQTQIEGLQSELEARMVQSKP 228
             ES  +T EKN+L+EE + L+++IE L  + + R   + P
Sbjct: 99  TEESRELTQEKNDLREEKASLKSEIENLNIQYQQRARATYP 139


>29830.m001386 DNA binding protein, putative
          Length = 317

 Score = 68.2 bits (165), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 36/100 (36%), Positives = 58/100 (58%)

Query: 124 KGIHKAEREKLKREQXXXXXXXXXXXXXXTQPNNGKASILSEATKLLKDFLVQIECLKKE 183
           K + KA+REKL+R++               +P N KA+IL++  ++LKD   ++  LK E
Sbjct: 42  KKVQKADREKLRRDRLNEQFLELGNTLDPDRPKNDKATILTDTIQMLKDLTAEVSRLKAE 101

Query: 184 NASLLSESHYVTTEKNELKEENSVLQTQIEGLQSELEARM 223
            A+L  ES  +  EKNEL+EE + L++ IE L  + + R+
Sbjct: 102 YATLSEESRELMQEKNELREEKASLKSDIENLSVQYQQRV 141