Jatropha Genome Database

JcCA0149281.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0149281.10 + phase: 0 
         (885 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

27553.m000320 spliceosomal protein sap, putative                      811   0.0  
29113.m000029 spliceosomal protein sap, putative                       88   2e-17
29932.m000602 DNA repair protein xp-E, putative                        87   4e-17

>27553.m000320 spliceosomal protein sap, putative
          Length = 1220

 Score =  811 bits (2094), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 415/598 (69%), Positives = 463/598 (77%), Gaps = 35/598 (5%)

Query: 1   MAVSEEECXXXXXXXXXXXATLNGTHYLAKCVLRGSAVLQVVYGHFRSSSSNDIIFGKET 60
           MAVSEEEC           A+ N  HYLAKCVLRGS VLQVVYGHFRS SSNDI+FGKET
Sbjct: 1   MAVSEEECSNAKSRSSSPSASSNSAHYLAKCVLRGSVVLQVVYGHFRSPSSNDIVFGKET 60

Query: 61  XXXXXXXXXXXXXXXXCEQPIFGTIKDLAVIPSNGKLHARSPQ--EKDLLAVVSDSGKLS 118
                           CEQP+FGTIKDLAVIP N K   RSPQ   KDLLAV SDSGKLS
Sbjct: 61  SIELVIIGEDGILQSICEQPVFGTIKDLAVIPWNEKFCTRSPQMHGKDLLAVTSDSGKLS 120

Query: 119 FLTFCNEMLRFFPLTQVQLSSPGNSRHQLGRMLAVDSSGCFIASSAYVDQLALFSLSVSG 178
           FL FCNEM RFFPLT +QLS+ GNS  QLGR+LAVD+SGCFIA+SAYVD+LALFSLS++G
Sbjct: 121 FLIFCNEMHRFFPLTHIQLSNSGNSIRQLGRLLAVDTSGCFIATSAYVDRLALFSLSITG 180

Query: 179 GSDLIDKK--YPQ-----------------AKYIWY-----------NMEHVLYFKGFLS 208
            SD+ID++  YP                  +  IW            + EH       L+
Sbjct: 181 SSDIIDEQIFYPPESEGHTSFTRSIQRPNISGTIWSICFISRDLSQSSKEHNPVLAIILN 240

Query: 209 IKRGAXXXXXXXXXWNIGEHAINVISLYVEAGPIAHDIIEVPHSNGFAFLFRVGDALLMD 268
            +            WNI  H INVI   VEAGPI HDI+EVPHSNGFAFLFRVGDALLMD
Sbjct: 241 -RSSELLNELLLLEWNIRGHTINVIP-NVEAGPI-HDIVEVPHSNGFAFLFRVGDALLMD 297

Query: 269 LRDAHNPCCIYRTSLNFLPTAVEEQNFVEESCRVHDVDDDGLFNVAACALLELRDYDPMC 328
           LRDAH+PC + +TS +FLP A+EEQNFVE+SCRVHDVDDD LFNVAACALL+L+DYDPMC
Sbjct: 298 LRDAHHPCRVCKTSFSFLPAAMEEQNFVEDSCRVHDVDDDSLFNVAACALLQLQDYDPMC 357

Query: 329 IDSEGSNIKSTSNYMCSWSWGPESDKNPRMIFCIDTGEFFMIEISFDSEGLKVNLSDCLY 388
           IDSEG ++KSTS Y+CSWSW PE DKNP+MIFCIDTGEFFMIEISFDSE L+VNLSDC+Y
Sbjct: 358 IDSEGGSVKSTSKYVCSWSWEPEPDKNPKMIFCIDTGEFFMIEISFDSEDLRVNLSDCVY 417

Query: 389 KGQPCKSLLWVESGFLAAIVEMGDGIVLKVEDGRLLYTSPIQNIAPILDMLVVDCHDEKR 448
           KG P KSLLWVE GFLAA+VEMGDGIVLKVE+ RL Y SPIQNIAPILDM VVD HDEK+
Sbjct: 418 KGLPSKSLLWVEGGFLAALVEMGDGIVLKVENDRLRYASPIQNIAPILDMSVVDHHDEKQ 477

Query: 449 DQMFACCGVAPEGSLRIIRTGISVEKLVKTASIYQGITGTWTLRMKLNDLYHSFLVISFV 508
           +QMF CCGVAPEGSLRIIR+GISVEKL++TA IYQG+TGTW LRMK+ DLYHSF+V+SFV
Sbjct: 478 EQMFGCCGVAPEGSLRIIRSGISVEKLLRTAPIYQGVTGTWALRMKVTDLYHSFVVLSFV 537

Query: 509 EETRVLSVGVSFTDVTDSVGFQPDVCTLACGLVGDGLLVQIHQTAVQLCLPTKIAHAE 566
           EETRVLSVGVSF DVTDS GF P+VCTLACGLVGDGLLVQIHQTAV+LCLPT++AHAE
Sbjct: 538 EETRVLSVGVSFADVTDSAGFLPNVCTLACGLVGDGLLVQIHQTAVRLCLPTQVAHAE 595



 Score =  309 bits (792), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 155/205 (75%), Positives = 175/205 (85%), Gaps = 2/205 (0%)

Query: 680 VEVLSFVPHEGLKVLACGTISLTNTLGTAVSGCIPQDVRLVLVDRSYVLSGLRNGMLLRF 739
           VEVL FVP EGL+VLA GTISLTNTLGTA+SGC+PQDVRLVLVDR YVLSGLRNGMLLRF
Sbjct: 596 VEVLCFVPDEGLRVLARGTISLTNTLGTAISGCVPQDVRLVLVDRLYVLSGLRNGMLLRF 655

Query: 740 EWPPASSMSS--LEFPHYGCPIDSCMVNVGGALSNMSAMSFEPQTCAVELRSKAMDELPV 797
           EWP +SS S   +E P+YG PIDSCM N    LS  +A+  E QTC+V+L   AMD  P+
Sbjct: 656 EWPSSSSSSISSMEIPYYGYPIDSCMTNACSGLSTTTAVFPESQTCSVDLTGGAMDGPPI 715

Query: 798 NLQLISTRRIGITPVFLVPLSDSLDADMIALSDRPWLLQTAKHSLSYSSISFQPSTHATP 857
           NLQLI+TRRIG+TPVFLVPL+DSLDADMIALSDRPWLLQTA+H LSY+SISFQPSTH+TP
Sbjct: 716 NLQLIATRRIGVTPVFLVPLTDSLDADMIALSDRPWLLQTARHGLSYTSISFQPSTHSTP 775

Query: 858 VCSAECPKGILFVAENSLHLVRVCY 882
           VCS ECPKG+LFVAENSLHLV + +
Sbjct: 776 VCSVECPKGLLFVAENSLHLVEMVH 800


>29113.m000029 spliceosomal protein sap, putative
          Length = 1214

 Score = 88.2 bits (217), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 90/163 (55%), Gaps = 16/163 (9%)

Query: 406 AIVEMGDGIVLKVEDG------------RLLYTSPIQNIAPILDMLVVDCHDEKRDQMFA 453
           A VE     +++ E+G             L+    ++++ PI+DM + +  DE+  Q+F+
Sbjct: 365 ADVEASSATLMETEEGFQPVFFQPRGLKNLVRIDQVESLMPIMDMKIANLFDEETPQIFS 424

Query: 454 CCGVAPEGSLRIIRTGISVEKLVKTASIYQGI-TGTWTLRMKLNDLYHSFLVISFVEETR 512
            CG  P  SLRI+R G+++ ++    S   G+ +  WT++  +ND + +++++SF   T 
Sbjct: 425 LCGRGPRSSLRILRPGLAISEM--AVSQLPGVPSAVWTVKKNVNDEFDAYIIVSFNNATL 482

Query: 513 VLSVGVSFTDVTDSVGFQPDVCTLACGLVGDGLLVQIHQTAVQ 555
           VLS+G +  +V +S GF     +LA  L+GD  L+Q+H   ++
Sbjct: 483 VLSIGETVEEVNNS-GFLDTTPSLAVSLIGDDSLMQVHPNGIR 524


>29932.m000602 DNA repair protein xp-E, putative
          Length = 1033

 Score = 87.0 bits (214), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 77/303 (25%), Positives = 142/303 (46%), Gaps = 34/303 (11%)

Query: 347 SWGPESDKNPRMIFCIDTGEFFMIEISFDSE---GLKVNLSDCLYKGQPCKSLLWVESGF 403
           ++G       R +     G   ++ I+ + E   GLK+ L   L +     ++ ++++  
Sbjct: 202 AYGRVDADGSRYLLGDHAGLLHLLVITHEKEKVTGLKIEL---LGETSIASTISYLDNAV 258

Query: 404 LAAIVEMGDGIVLKVE---DGRLLYTSPIQ---NIAPILDMLVVDCHDEKRDQMFACCGV 457
           +      GD  ++K+    D +  Y   ++   N+ PI+D  VVD   + + Q+  C G 
Sbjct: 259 VYIGSSYGDSQLVKLNLQPDAKGSYVEVLESYVNLGPIVDFCVVDLERQGQGQVVTCSGA 318

Query: 458 APEGSLRIIRTGISVEKLVKTASIYQGITGTWTLRMKLNDLYHSFLVISFVEETRVLSVG 517
             +GSLRI+R GI + +  + +   QGI G W+LR   +D + +FLV+SF+ ETR+L++ 
Sbjct: 319 YKDGSLRIVRNGIGINE--QASVELQGIKGMWSLRSSTDDPFDTFLVVSFISETRILAMN 376

Query: 518 V-SFTDVTDSVGFQPDVCTLACGLVGDGLLVQIHQTAVQLCLPTKIAHAEGIPLSSPVCT 576
           +    + T+  GF   V TL C       LVQ+  ++V+L   T          +  +  
Sbjct: 377 LEDELEETEIEGFCSQVQTLFCHYAVYNQLVQVTSSSVRLVSST----------TRELQN 426

Query: 577 SWF-PDNTSISLGAVGHDLIVVSTSNPCFLYI-LGIRLLSTYHYEIYELQHLRLLNELSC 634
            W  P   SI++       ++++T     +Y+ +G   L+         +H +L  E+SC
Sbjct: 427 EWHAPAGYSINVATANATQVLLATGGGHLVYLEIGDGTLT-------HTKHAQLECEISC 479

Query: 635 ISI 637
           + I
Sbjct: 480 LDI 482