Jatropha Genome Database

JcCA0149151.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0149151.10 - phase: 2 /pseudo/partial
         (625 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29851.m002387 conserved hypothetical protein                         1056   0.0  

>29851.m002387 conserved hypothetical protein
          Length = 1255

 Score = 1056 bits (2731), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 538/622 (86%), Positives = 547/622 (87%), Gaps = 17/622 (2%)

Query: 15  GSGGNKDHEEESVGQSLEIVAKAAGXXXXXXXXXXXXXXXXXXXX--MEEDSMSPATVFC 72
           G+GGNK+ EEESVGQSLEIVAK AG                      MEEDS+SPATVFC
Sbjct: 15  GTGGNKEPEEESVGQSLEIVAKGAGSDKPAGEPVSSEEDSVEKPDDPMEEDSVSPATVFC 74

Query: 73  IRLKQPRSNLQHKMSVPELCRNFSAVAWCGKLNAIACASETCARIPCSNANPPFWIPIHI 132
           IRLKQPRSNLQHKMSVPELCRNFSAVAWCGKLNAIACASETCARIP SNANPPFWIPIHI
Sbjct: 75  IRLKQPRSNLQHKMSVPELCRNFSAVAWCGKLNAIACASETCARIPSSNANPPFWIPIHI 134

Query: 133 VIPERPTECAVFNVIADSPRDSVQFIEWSPTSCPRALLIANFHGRITIWTQPSQGAANLV 192
           VIPERPTECAVFNVIADSPRDSVQFIEWSPTSCPRALLIANFHGRITIWTQPSQG  N+V
Sbjct: 135 VIPERPTECAVFNVIADSPRDSVQFIEWSPTSCPRALLIANFHGRITIWTQPSQGPVNMV 194

Query: 193 RDASCWQREHEWRQDIAVVTKWLSGVSPYRWLXXXXXXXXXXXXXFEEKFLSQQSQTS-- 250
           RDASCWQREHEWRQDIAVVTKWLSGVSPYRWL             FEEKFLSQQSQTS  
Sbjct: 195 RDASCWQREHEWRQDIAVVTKWLSGVSPYRWLSSKSSSSTNSKSTFEEKFLSQQSQTSAR 254

Query: 251 -------------GSVQLHWSQWPPSQNNATPKWFSTSKGLLGAGPSGIMAADAIVTDSG 297
                        GSVQLHWSQWPPS+ NATP+WF TSKGLLGAGPSGIMAADAIVTDSG
Sbjct: 255 WPNFLCVCSVFSSGSVQLHWSQWPPSRTNATPEWFCTSKGLLGAGPSGIMAADAIVTDSG 314

Query: 298 AMHVAGVPIVNPSTVVVWEVTPGPGPGFQAIAKTSTSNGVPPSLNPPTWSGFAPLAAYLF 357
           AMHVAGVPIVNPSTVVVWEVTPG G GFQA  KTS SNGVPPSLNPP WSGFAPLAAYLF
Sbjct: 315 AMHVAGVPIVNPSTVVVWEVTPGLGHGFQATPKTSISNGVPPSLNPPNWSGFAPLAAYLF 374

Query: 358 SWQEYLISEAKHGKKQTDQDFSDAVSLHCSPVSNFSAYVSPEAAAQSAATTTWGSGVTAV 417
           SWQEYLISEAK G+K TDQDFS+ VSLHCSPVSNFSAYVSPEAAAQSAATTTWGSGVTAV
Sbjct: 375 SWQEYLISEAKQGRKHTDQDFSNTVSLHCSPVSNFSAYVSPEAAAQSAATTTWGSGVTAV 434

Query: 418 AFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESSLQPVVLHQIFGNPTSSF 477
           AFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESSLQPVVLHQIFGNPTSSF
Sbjct: 435 AFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESSLQPVVLHQIFGNPTSSF 494

Query: 478 GGQAPMQTVWVSKVDTSIHPTNDFKNHQAVAAGPTSDVRKTSDSGVEKAKSLTFDPFDLP 537
           GGQAPMQTVWVSKVDTSI PTNDFKNHQ V+AGP  D RK SDSGVEKAKSLTFDPFDLP
Sbjct: 495 GGQAPMQTVWVSKVDTSIPPTNDFKNHQTVSAGPAPDARKASDSGVEKAKSLTFDPFDLP 554

Query: 538 SDVRSLARIVYSAHGGEIAIAFLRGGVHIFSGPNFALVDSYQINVGSAIAAPAFSSTSCC 597
           SDVRSLARIVYSAHGGEIAIAFLRGGVHIFSGPNF  VDSYQINVGSAIAAPAFSSTSCC
Sbjct: 555 SDVRSLARIVYSAHGGEIAIAFLRGGVHIFSGPNFTPVDSYQINVGSAIAAPAFSSTSCC 614

Query: 598 SASVWHDASKDRTILKIIRVLP 619
           SASVWHD SKDRTILKIIRVLP
Sbjct: 615 SASVWHDTSKDRTILKIIRVLP 636