Jatropha Genome Database

JcCA0148831.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0148831.10 + phase: 0 
         (288 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

28745.m000035 succinate dehydrogenase, putative                       446   e-126
29633.m000905 succinate dehydrogenase, putative                       234   4e-62

>28745.m000035 succinate dehydrogenase, putative
          Length = 313

 Score =  446 bits (1148), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 210/296 (70%), Positives = 239/296 (80%), Gaps = 41/296 (13%)

Query: 33  WIRHGRNRLSHIFGKETAKKENFPVLEGHPAGQEHAQESIETYDTIKTNIKRLIKEFKIY 92
           W+RHG N+++ + GK+  K +NFP+L+GHP GQ+HAQES+ETY T++ NIK+LIKEF++Y
Sbjct: 11  WLRHGYNKIARMLGKQDPKDQNFPILKGHPVGQQHAQESVETYGTVQDNIKKLIKEFRVY 70

Query: 93  RWNPDIPNRKPFLQSYYIDLSTCGPMVLDVLQKIKAEDDSSLSYRRSCREGICGSCAMNI 152
           RW+PD PN KPFLQSY+IDLS+CGPMVLD LQKIKAEDDSSLSYRRSCREGICGSC+MNI
Sbjct: 71  RWSPDNPNNKPFLQSYFIDLSSCGPMVLDALQKIKAEDDSSLSYRRSCREGICGSCSMNI 130

Query: 153 DGTNTVACLKPIDADTTKPTIITPLPHMFVIKDLVVDLTNFYNQY--------------- 197
           DGTNTVACLKPIDADT++PTIITPLPHM+VIKDLVVDLTNFYNQY               
Sbjct: 131 DGTNTVACLKPIDADTSRPTIITPLPHMYVIKDLVVDLTNFYNQYRSIEPWLKTRKKPED 190

Query: 198 --------------------------SASCPSYWWSPEEFLGPAPLLHAYRWISDSRDEF 231
                                     SASCPSYWW+PEEFLGPAPL+HAYRWISDSRD+F
Sbjct: 191 GREYRQSPADRKKLDGLYECILCACCSASCPSYWWNPEEFLGPAPLIHAYRWISDSRDDF 250

Query: 232 TEERLQALTEDTKKLYKCRTIKNCTACCPKSLNPADAIHKMKTKHLLSQPVERLET 287
           T+ERLQALTED K+LY+CRTIKNCTA CPKSLNPADAIHKMKTKHLLSQPVE LE 
Sbjct: 251 TDERLQALTEDQKRLYRCRTIKNCTATCPKSLNPADAIHKMKTKHLLSQPVEELEV 306


>29633.m000905 succinate dehydrogenase, putative
          Length = 284

 Score =  234 bits (596), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 130/255 (50%), Positives = 151/255 (59%), Gaps = 45/255 (17%)

Query: 67  HAQESIETYDTIKTNIKRLIKEFKIYRWNPDIPNRKPFLQSYYIDLSTCGPMVLDVLQKI 126
           HA E+       K +    +K F+IYRWNPD P+ KP LQ Y IDL  CGPMVLD L KI
Sbjct: 31  HASEAEAQKVEPKASSTASLKTFQIYRWNPDNPS-KPTLQDYKIDLKECGPMVLDALIKI 89

Query: 127 KAEDDSSLSYRRSCREGICGSCAMNIDGTNTVACLKPIDADTTKPTIITPLPHMFVIKDL 186
           K E D +L++RRSCREGICGSCAMNIDG N +ACL    +  +  + ITPLPHMFVIKDL
Sbjct: 90  KNEIDPTLTFRRSCREGICGSCAMNIDGCNGLACLT-KISSGSTSSTITPLPHMFVIKDL 148

Query: 187 VVDLTNFYNQY------------------------------------------SASCPSY 204
           VVD+TNFYNQY                                          S SCPSY
Sbjct: 149 VVDMTNFYNQYKSIEPWLKRKNPPPVDGKEIPQSKKDRAKLDGMYECILCACCSTSCPSY 208

Query: 205 WWSPEEFLGPAPLLHAYRWISDSRDEFTEERLQALTEDTKKLYKCRTIKNCTACCPKSLN 264
           WW+PE +LGPA LLHA RWISDSRDE+T ERL A+  D  KLY+C TI NC   CPK LN
Sbjct: 209 WWNPESYLGPAALLHANRWISDSRDEYTNERLDAIN-DEFKLYRCHTILNCARACPKGLN 267

Query: 265 PADAIHKMKTKHLLS 279
           P   I  +K   ++ 
Sbjct: 268 PGKQIMHIKQLQMVG 282