Jatropha Genome Database

JcCA0148631.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0148631.20 - phase: 2 /partial
         (109 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30147.m013950 conserved hypothetical protein                           96   4e-21

>30147.m013950 conserved hypothetical protein
          Length = 535

 Score = 95.9 bits (237), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 60/109 (55%), Positives = 72/109 (66%)

Query: 1   EIENEDELKTGPYSARTNEQXXXXXXXXXXXXXXXXXXXXXXXRRPKPSVQKEQLADDQP 60
           EIENEDE+K GPY  ++NEQ                       RRPKPSVQKEQ  ++Q 
Sbjct: 427 EIENEDEVKAGPYGTQSNEQPVRRAWVPPQPPPVAMAEAAEAIRRPKPSVQKEQSGEEQS 486

Query: 61  VSHSTDATDELQRITKISESGGAVEINGGESEVNSSEIKEDQEHSYEGN 109
            S  TDATDELQ+ITKI+ESGG + IN G SE+NS+EIKE+QE +YEGN
Sbjct: 487 KSLQTDATDELQKITKIAESGGGMGINDGGSELNSNEIKEEQEINYEGN 535