Jatropha Genome Database

JcCA0148631.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0148631.10 - phase: 0 /partial
         (241 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30147.m013949 1-deoxy-D-xylulose 5-phosphate reductoisomerase, c...   429   e-121

>30147.m013949 1-deoxy-D-xylulose 5-phosphate reductoisomerase,
           chloroplast precursor, putative
          Length = 467

 Score =  429 bits (1104), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 213/241 (88%), Positives = 224/241 (92%)

Query: 1   MALNLLSPAEIKAISFLDSTKSNQLPKLPGSFSLKRKDLGRKVQCSXXXXXXXXXXXXXX 60
           MALNLLSPAE+K++SFLDST+S+QLPKLPGSFSLKRK+ GRKVQCS              
Sbjct: 1   MALNLLSPAELKSVSFLDSTRSSQLPKLPGSFSLKRKEFGRKVQCSAQAPPPAWPGRAVA 60

Query: 61  XXGRKTWDGPKPISIVGSTGSIGTQTLDIVAENPNKFKVVALAAGSNVTLLADQVKTFKP 120
             GRKTWDGPKPISIVGSTGSIGTQTLDIVAENP+KF+VVALAAGSNVTLLADQVKTFKP
Sbjct: 61  EPGRKTWDGPKPISIVGSTGSIGTQTLDIVAENPDKFRVVALAAGSNVTLLADQVKTFKP 120

Query: 121 QLVAVRNESLVDELKEALADVEEKPEIIPGEQGIVEVARHPDAVSVVTGIVGCAGLKPTV 180
           QLV+VR+ESLVDELKEALADV+EKPEIIPGEQGIVEVARHPDAVSVVTGIVGCAGLKPTV
Sbjct: 121 QLVSVRDESLVDELKEALADVDEKPEIIPGEQGIVEVARHPDAVSVVTGIVGCAGLKPTV 180

Query: 181 AAIEAGKDICLANKETLIAGGPFVLPLAHKYNVKILPADSEHSAIFQCIQGLPEGALRRI 240
           AAIEAGKDICLANKETLIAGGPFVLPLAHKYNVKILPADSEHSAIFQCIQGLPEGALRRI
Sbjct: 181 AAIEAGKDICLANKETLIAGGPFVLPLAHKYNVKILPADSEHSAIFQCIQGLPEGALRRI 240

Query: 241 I 241
           I
Sbjct: 241 I 241