Jatropha Genome Database

JcCA0148271.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0148271.30 + phase: 0 
         (136 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

28094.m000179 pentatricopeptide repeat-containing protein, putative   155   5e-39

>28094.m000179 pentatricopeptide repeat-containing protein, putative
          Length = 553

 Score =  155 bits (392), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 83/134 (61%), Positives = 99/134 (73%), Gaps = 8/134 (5%)

Query: 1   MAPALYFRPCISPPSTNWSHPKMLVNPLNAIPKIYXXXXXXXXXXXLEVVAKGMLSQRKF 60
           MAP L F+P ISP STNW  PK++VN  NA+               + VVA+GMLS RKF
Sbjct: 1   MAPTLSFKPYISPASTNWRQPKVVVNS-NAV------NWNGKRRVEVTVVARGMLSPRKF 53

Query: 61  MQKRRKVEVFKDAADEADQKNWRGVMKQIEETGSAVAVLKSKRITQNQDLPKDLVLGTLV 120
           +Q+R+KVEVFKD ADEA  KNWRG+M+QIEET S V+VLKSK I  NQ LPK LVLGTLV
Sbjct: 54  LQRRKKVEVFKDEADEAYHKNWRGLMRQIEETDSPVSVLKSKLIN-NQSLPKHLVLGTLV 112

Query: 121 RFQQLKKWNLVSEV 134
           RF+QLKKW+LVS++
Sbjct: 113 RFKQLKKWHLVSQI 126