Jatropha Genome Database

JcCA0147671.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0147671.20 + phase: 0 
         (236 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30189.m001675 Succinyl-CoA ligase [GDP-forming] subunit alpha-2,...   315   1e-86
30189.m001676 Succinyl-CoA ligase [GDP-forming] subunit alpha-2,...   315   2e-86

>30189.m001675 Succinyl-CoA ligase [GDP-forming] subunit alpha-2,
           mitochondrial precursor, putative
          Length = 334

 Score =  315 bits (806), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 161/205 (78%), Positives = 163/205 (79%), Gaps = 5/205 (2%)

Query: 1   MARQAVAKLLGXXXXXXXXXXXXXXXXXANHARQYXXXXXXXXXVFVDKNTRLICQGITG 60
           MARQAVAKL+G                 A   RQY         VFVDKNT LICQGITG
Sbjct: 1   MARQAVAKLIGSIASRKPSLSSS-----AIQTRQYAAAASPPAAVFVDKNTGLICQGITG 55

Query: 61  KNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASVIYVPPPFX 120
           KNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASVIYVPPPF 
Sbjct: 56  KNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASVIYVPPPFA 115

Query: 121 XXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNKQSKTRLIGPNCPGIIKPGECKIGI 180
                      LDLVVCITEGIPQHDMVRVKAALN+QSKTRLIGPNCPGIIKPGECKIGI
Sbjct: 116 AAAIMEAMEAELDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGI 175

Query: 181 MPGYIHKPGRIGIVSRSGTLTYEAV 205
           MPGYIHKPGRIGIVSRSGTLTYEAV
Sbjct: 176 MPGYIHKPGRIGIVSRSGTLTYEAV 200


>30189.m001676 Succinyl-CoA ligase [GDP-forming] subunit alpha-2,
           mitochondrial precursor, putative
          Length = 334

 Score =  315 bits (806), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 160/205 (78%), Positives = 163/205 (79%), Gaps = 5/205 (2%)

Query: 1   MARQAVAKLLGXXXXXXXXXXXXXXXXXANHARQYXXXXXXXXXVFVDKNTRLICQGITG 60
           MARQAVAKL+G                 A   RQY         VFVDKNTR+ICQGITG
Sbjct: 1   MARQAVAKLIGSIASRKPSLSSS-----AIQTRQYAAAASPPAAVFVDKNTRVICQGITG 55

Query: 61  KNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASVIYVPPPFX 120
           KNGTFHTEQAIEYGT MVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASVIYVPPPF 
Sbjct: 56  KNGTFHTEQAIEYGTTMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASVIYVPPPFA 115

Query: 121 XXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNKQSKTRLIGPNCPGIIKPGECKIGI 180
                      LDLVVCITEGIPQHDMVRVKAALN+QSKTRLIGPNCPGIIKPGECKIGI
Sbjct: 116 AAAIMEAMEAELDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGI 175

Query: 181 MPGYIHKPGRIGIVSRSGTLTYEAV 205
           MPGYIHKPGRIGIVSRSGTLTYEAV
Sbjct: 176 MPGYIHKPGRIGIVSRSGTLTYEAV 200