Jatropha Genome Database

JcCA0147561.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0147561.20 - phase: 0 
         (203 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30128.m008717 conserved hypothetical protein                          355   1e-98

>30128.m008717 conserved hypothetical protein
          Length = 204

 Score =  355 bits (910), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 171/204 (83%), Positives = 190/204 (93%), Gaps = 1/204 (0%)

Query: 1   MALNPQLFQNGLPVPFTNEIFVLSRDGVEFEIDKIPGSHGGHVKAKGVIYLSNVRLVFVA 60
           MA+NPQLF+NG+PVPF NEIFVLSRDGVEFEIDKI GSHGG VKAKG IYLSNVR+VF+A
Sbjct: 1   MAVNPQLFENGMPVPFVNEIFVLSRDGVEFEIDKITGSHGGDVKAKGTIYLSNVRMVFLA 60

Query: 61  HKPVGAFTAFDMPLLYIHGEKFNQPIFFCNNISGLVEPVVPENENGALYSTHSFKILFKE 120
           +K VG F AFDMPLLYIHGEKF+QPIFFCNN+SGLVEPVVPENE+ ALYSTHSFKILFKE
Sbjct: 61  NKHVGNFNAFDMPLLYIHGEKFSQPIFFCNNLSGLVEPVVPENESRALYSTHSFKILFKE 120

Query: 121 GGCGTFIPIFFNLISSVRQNNQPT-PGMGPQMDPLRAAQTPVDEMMRHAYVDPNDPTRIF 179
           GGCGTFIP+FFNLISSVRQ+N+ +  GM PQ++PL+A+QTPVDEMMRHAYVDPNDPTRIF
Sbjct: 121 GGCGTFIPLFFNLISSVRQHNRLSISGMEPQINPLQASQTPVDEMMRHAYVDPNDPTRIF 180

Query: 180 LQQPTPESELRRRTYQLSPVERSM 203
           LQQPTP+SELRRRTY LSP ERS+
Sbjct: 181 LQQPTPQSELRRRTYHLSPAERSI 204