Jatropha Genome Database

JcCA0147251.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0147251.30 - phase: 0 /TE/partial
         (84 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29709.m001222 retinoblastoma-binding protein, putative                155   4e-39
27785.m000034 retinoblastoma-binding protein, putative                 94   1e-20
29912.m005328 WD-repeat protein, putative                              54   2e-08
28694.m000672 WD-repeat protein, putative                              53   4e-08

>29709.m001222 retinoblastoma-binding protein, putative
          Length = 424

 Score =  155 bits (392), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 75/84 (89%), Positives = 77/84 (91%), Gaps = 1/84 (1%)

Query: 1   LLTWSFFCRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVIASVAEDNILQ 60
           L+ W    RIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVIASVAEDNILQ
Sbjct: 342 LMVWDL-SRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVIASVAEDNILQ 400

Query: 61  IWQMEENIYHDEDDMPGDESTKGS 84
           IWQM ENIYHDEDD+PGDES KGS
Sbjct: 401 IWQMAENIYHDEDDIPGDESNKGS 424


>27785.m000034 retinoblastoma-binding protein, putative
          Length = 415

 Score = 94.0 bits (232), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 44/62 (70%), Positives = 50/62 (80%)

Query: 9   RIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVIASVAEDNILQIWQMEENI 68
           RI EEQ   DAEDGPPELLF HGGH +KISDFSWN  + WVI+SVA+DN LQ+WQM+E I
Sbjct: 342 RIGEEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTLQVWQMDEGI 401

Query: 69  YH 70
           Y 
Sbjct: 402 YR 403


>29912.m005328 WD-repeat protein, putative
          Length = 503

 Score = 53.5 bits (127), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 35/64 (54%), Gaps = 7/64 (10%)

Query: 19  AEDGPPELLFIHGGHTSKISDFSWNPCEDWVIASVAED-------NILQIWQMEENIYHD 71
           A + P  L F H GH  K+ DF WN  + W I SV++D         LQIW+M + IY  
Sbjct: 422 APNSPAGLFFQHAGHRDKVVDFHWNASDPWTIVSVSDDCDTTGGGGTLQIWRMSDLIYRP 481

Query: 72  EDDM 75
           ED++
Sbjct: 482 EDEV 485


>28694.m000672 WD-repeat protein, putative
          Length = 466

 Score = 52.8 bits (125), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 34/61 (55%), Gaps = 7/61 (11%)

Query: 22  GPPELLFIHGGHTSKISDFSWNPCEDWVIASVAED-------NILQIWQMEENIYHDEDD 74
            PP L F H GH  KI DF WN  + W I SV++D         LQIW+M + IY  E++
Sbjct: 388 APPGLFFQHAGHRDKIVDFHWNSSDPWTIVSVSDDCESTSGGGTLQIWRMIDLIYRPEEE 447

Query: 75  M 75
           +
Sbjct: 448 V 448