Jatropha Genome Database

JcCA0147251.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0147251.20 + phase: 0 
         (178 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29709.m001221 conserved hypothetical protein                          189   8e-49

>29709.m001221 conserved hypothetical protein
          Length = 151

 Score =  189 bits (479), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 93/133 (69%), Positives = 102/133 (76%), Gaps = 5/133 (3%)

Query: 12  LRLNVEAGNYSNSNSKEKNGDFTPERIARTPKNHSLPYLSLAKPSWVVKTESNVRKEIRK 71
           LRL  E  NY  S+    N             N S P+LSL+KPSW+V+TESNVRKEIRK
Sbjct: 12  LRLEPEPNNYVKSSPTATN-----TNTNPITTNPSSPFLSLSKPSWIVRTESNVRKEIRK 66

Query: 72  KPNPPCVVCKGSGRVDCHYCSGKGRTNLVHLPMLPKGEWPKWCRTCGGSGLSYCSRCLGT 131
           KP+P CVVC G+GRVDCH CSG GRTN +HL MLPKGEWPKWCRTCGGSGLSYCSRCLGT
Sbjct: 67  KPHPQCVVCHGTGRVDCHLCSGLGRTNFIHLAMLPKGEWPKWCRTCGGSGLSYCSRCLGT 126

Query: 132 GEYRYIMGFHFMK 144
           GEYRYIMGFHFM+
Sbjct: 127 GEYRYIMGFHFME 139