Jatropha Genome Database

JcCA0147181.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0147181.10 + phase: 0 
         (408 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30174.m008955 conserved hypothetical protein                          239   2e-63

>30174.m008955 conserved hypothetical protein
          Length = 455

 Score =  239 bits (610), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 181/456 (39%), Positives = 231/456 (50%), Gaps = 73/456 (16%)

Query: 1   MGFSNDSLSLNTNF----------KKRMLKDFLVDDLHTCSSTGFKSIPTKPADSS---I 47
           MG SND   LN  F          + RMLKDFL +D +  SSTGFKS P KP +SS   I
Sbjct: 1   MGCSNDDSFLNKVFEPRKQFPLEHRPRMLKDFLTEDSYASSSTGFKSFPRKPINSSSSTI 60

Query: 48  QTVFQNDLSTGKLFRS--RSTT-----MFAFHSVINALKNFQF-TSVKAPSIFPXXXXXX 99
            T+  +  +   L R+  RS T     +  F ++I A+K   F T+VK+PSI P      
Sbjct: 61  TTLCDDPNNKSSLIRTGHRSETASSPAISPFQAMIIAVKKIHFITAVKSPSILPRSLLRR 120

Query: 100 XXXXXXXXXXDTERA-SESKLESEVKITVTIKDIIRWKSFRDLMEEKSPPLDLAXXXXXX 158
                      T R   E+K  +E K+TVTIKDIIRWKSFRD++EEKS   DL       
Sbjct: 121 LSSKK-----STYRGIHENKKGAETKVTVTIKDIIRWKSFRDIVEEKSQSSDLPSSSPHH 175

Query: 159 -----XXXXXXXXXXXXXXXNGSSWCDSDFTSEYLPFWNGNSEEYGENEAMEVGKKDLPC 213
                               NGSSWCDSDFT+EYLP W+G SE++ ENE ++VGKK LP 
Sbjct: 176 YTTTTTTTVSTASSPCSRSSNGSSWCDSDFTAEYLPCWHGESEKFCENEEVKVGKKHLPR 235

Query: 214 VGEATIEAEKIVGPKAEEKQLSSPISVIDIEFEGDEDS------SSIYD----------- 256
           VGE  +EA  I   K EE+Q +SP+SVI+IEFE D+D        S+Y            
Sbjct: 236 VGEKLMEAATI--DKIEERQQNSPVSVINIEFEEDDDDEESKSFQSMYQLWSKRKLMQKI 293

Query: 257 ---ESNANVESKYPFNLEKWMAVXXXXXXXXXXXXXXX-------XXXXXXAWQLLNYFK 306
              ES   +++    NLE WM++                            A QLLN+ K
Sbjct: 294 RRYESRGRLDT---INLENWMSMEESTSSGEDEEEEETETNGRIDEEVEEKARQLLNHVK 350

Query: 307 QTSSMKE------ERLVFDFFREELCRKTYETKNEGFECEMLISRVKEWINGEDRMWVGG 360
           +TSS+ E      ER+V DFFR+ELCRK Y     G   + ++ RVK W++GE   W G 
Sbjct: 351 ETSSLGEYRKENVERVVLDFFRDELCRKRY---GNGSRNDEMLRRVKCWMDGEQSTWTGW 407

Query: 361 ENKEACIREMERQGKWSKXXXXXXXXXXXXXNWMMG 396
           E KEAC+R+ME +GKWSK             N MMG
Sbjct: 408 EKKEACVRDMETEGKWSKFEEEQQELVSAIENGMMG 443