Jatropha Genome Database

JcCA0147021.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0147021.20 + phase: 0 
         (169 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29681.m001323 cdc6, putative                                          239   6e-64

>29681.m001323 cdc6, putative
          Length = 523

 Score =  239 bits (609), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 122/171 (71%), Positives = 137/171 (80%), Gaps = 12/171 (7%)

Query: 1   MPSIA-GRNSSPCKEITEIVPSNDESATPQKRKLRSNA--MAVQDSPISSPVKWKSPRRS 57
           MPS+A GRN +        V SN E  TPQKR LRSNA   AVQ+SP+SSPVKWKSPRR 
Sbjct: 1   MPSLAAGRNVA--------VKSNTEQMTPQKRTLRSNAGAAAVQESPVSSPVKWKSPRRC 52

Query: 58  LPSGPNT-PRNEIENACKSVTKELSNDITNKSSWNPRDMEQISAVKEALHVSTAPSTVVC 116
             S PNT P   IE  CKS  K+L +D+ +K++WNPRDMEQ+SAVKEALHVSTAPSTVVC
Sbjct: 53  FVSSPNTTPDVGIEKMCKSPAKKLCDDLIDKANWNPRDMEQMSAVKEALHVSTAPSTVVC 112

Query: 117 REDEQKRVFEFCKTCIEQEKAGSLYVCGCPGTGKSLSMEKVKQQLIDWSKE 167
           REDEQK+VF+FCK CIEQEKAGSLYVCGCPGTGKSLSM KVKQQL+DW+KE
Sbjct: 113 REDEQKKVFDFCKACIEQEKAGSLYVCGCPGTGKSLSMAKVKQQLVDWTKE 163