Jatropha Genome Database

JcCA0146681.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0146681.10 + phase: 0 
         (248 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30131.m007074 diaminopimelate decarboxylase, putative                 379   e-106

>30131.m007074 diaminopimelate decarboxylase, putative
          Length = 488

 Score =  379 bits (973), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 191/230 (83%), Positives = 205/230 (89%), Gaps = 7/230 (3%)

Query: 1   MAATTTSTHLYRPPSLSKTRTYP-LNQNPFLKIPILPLKFTRTSSKPFSL--KAVLSQNQ 57
           MAATTT  HL  PP+LSK  T+  L QNPFLK   LP+KFTRTS KP SL  KAVLSQN 
Sbjct: 1   MAATTT--HLAHPPTLSKNITFHHLKQNPFLKTSTLPVKFTRTSPKPLSLTLKAVLSQNP 58

Query: 58  ANTFTQKTTPFKHCFTKPSDGFLYCENLKVQDIMENVEKRPFYLYSKPQITRNVEAYRDA 117
             T TQ+T  FKHCFTK +DGFLYCENLKVQD+ME+VEKRPFYLYSKPQITRNVEAY+ A
Sbjct: 59  --TLTQETAQFKHCFTKSNDGFLYCENLKVQDVMESVEKRPFYLYSKPQITRNVEAYKSA 116

Query: 118 LEGLNSIIGYAIKANNNLKVLEHLRQLGCGAVLVSGNELRLALRAGFDPKRCIFNGNGKL 177
           LEGLNSIIGYAIKANNN K+LEHLRQLGCGAVLVSGNELRLALRAG+DPK+CIFNGNGKL
Sbjct: 117 LEGLNSIIGYAIKANNNFKILEHLRQLGCGAVLVSGNELRLALRAGYDPKKCIFNGNGKL 176

Query: 178 LEDLVLAAQEGVFVNVDSEFDLENIVAAARIAGEKVNVLLRINPDVDPQV 227
           LEDLVLAA+EGVFVNVDSEFDLENIVAA+RIAGEK+NVLLRINPDVDPQV
Sbjct: 177 LEDLVLAAEEGVFVNVDSEFDLENIVAASRIAGEKINVLLRINPDVDPQV 226