Jatropha Genome Database

JcCA0146401.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0146401.20 + phase: 0 
         (193 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29726.m004095 conserved hypothetical protein                           78   2e-15

>29726.m004095 conserved hypothetical protein
          Length = 181

 Score = 78.2 bits (191), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 34/47 (72%), Positives = 37/47 (78%), Gaps = 1/47 (2%)

Query: 119 WNFDRFGGQNWDEXXXXXXX-RFAYGFVYEVIYWIALSTCMHFAFEK 164
           WNFD+FGG NWDE        +FAYGFVYEVIYWIALS C+HFAFEK
Sbjct: 114 WNFDKFGGHNWDESSSWSSSSKFAYGFVYEVIYWIALSNCLHFAFEK 160



 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/60 (61%), Positives = 41/60 (68%), Gaps = 9/60 (15%)

Query: 1  MDIFLAADGVTIATQQ-GVGIANSHLQRQNLISNCNLTLSARVLQTYTVIFDALAPPPVK 59
          MDI L AD +T+ATQQ G+G A S L RQN ISN NL       QT  VIFDA+APPPVK
Sbjct: 1  MDISLIADPITLATQQQGLGFAISLLHRQN-ISNTNL-------QTSAVIFDAIAPPPVK 52