Jatropha Genome Database

JcCA0146401.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0146401.10 - phase: 0 
         (206 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29726.m004096 60S ribosomal protein L19, putative                     373   e-104
29986.m001659 60S ribosomal protein L19, putative                     355   8e-99
29651.m000282 60S ribosomal protein L19, putative                     171   3e-43

>29726.m004096 60S ribosomal protein L19, putative
          Length = 206

 Score =  373 bits (957), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 188/206 (91%), Positives = 190/206 (92%)

Query: 1   MVSLKLQKRLAASVLKCGKGKVWLDPNEVNEISMANSRQNVRKLVKDGFIIRKPTKIHSR 60
           MVSLKLQKRLAASVLKCGKGKVWLDPNE NEISMANSRQN+RKLVKDGFIIRKPTKIHSR
Sbjct: 1   MVSLKLQKRLAASVLKCGKGKVWLDPNEGNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXXKYRESKKIDKHMY 120
           SRARRMKEAKRKGRHSGYGKRKGTREARLPTKI              KYRESKKIDKHMY
Sbjct: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMY 120

Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREER 180
           HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREER
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREER 180

Query: 181 LAQGPGEKAPQAPAPQQTEGAKKSKK 206
           LAQGPGEKAPQAPAPQ TEGAKKS+K
Sbjct: 181 LAQGPGEKAPQAPAPQHTEGAKKSQK 206


>29986.m001659 60S ribosomal protein L19, putative
          Length = 208

 Score =  355 bits (911), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 182/208 (87%), Positives = 185/208 (88%), Gaps = 2/208 (0%)

Query: 1   MVSLKLQKRLAASVLKCGKGKVWLDPNEVNEISMANSRQNVRKLVKDGFIIRKPTKIHSR 60
           MVSLKLQKRLAASVLKCGKGKVWLDPNE NEISMANSRQN+RKLVKDGFIIRKPTKIHSR
Sbjct: 1   MVSLKLQKRLAASVLKCGKGKVWLDPNEANEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXXKYRESKKIDKHMY 120
           SRARRMKEAKRKGRHSGYGKRKGTREARLPTKI              KYRESKKIDKHMY
Sbjct: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMY 120

Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREER 180
           HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERK ARREER
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKFARREER 180

Query: 181 LAQGPGEKAPQA--PAPQQTEGAKKSKK 206
           LAQGPG + P A  PA Q TEG+KKSKK
Sbjct: 181 LAQGPGAEKPIAAPPASQSTEGSKKSKK 208


>29651.m000282 60S ribosomal protein L19, putative
          Length = 150

 Score =  171 bits (432), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 85/132 (64%), Positives = 103/132 (78%), Gaps = 1/132 (0%)

Query: 34  MANSRQNVRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKI 93
           MANSR N+RKL++DGFIIRKP   HSRS+ARRM+EAK++G+HSG+GKRKGTREARLP+K 
Sbjct: 1   MANSRMNIRKLIQDGFIIRKPATTHSRSQARRMQEAKQRGKHSGFGKRKGTREARLPSKQ 60

Query: 94  XXXXXXXXXXXXXXKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEK-ARE 152
                         KYRE  KID+HMYH MY+KVKGN F+NKRVLMESIHK KAEK A++
Sbjct: 61  KWMGKLRVLRRLLKKYREVDKIDRHMYHYMYIKVKGNAFRNKRVLMESIHKLKAEKTAKD 120

Query: 153 KTLSDQFEAKRA 164
           + + DQF A +A
Sbjct: 121 RAVLDQFVAWKA 132