Jatropha Genome Database

JcCA0146311.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0146311.10 + phase: 0 /TE/pseudo/partial
         (334 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30190.m010988 conserved hypothetical protein                           69   4e-12
28752.m000330 conserved hypothetical protein                           67   2e-11
29908.m006211 conserved hypothetical protein                           63   2e-10
28331.m000098 conserved hypothetical protein                           63   2e-10
30065.m001147 conserved hypothetical protein                           49   3e-06
29854.m001092 conserved hypothetical protein                           49   4e-06

>30190.m010988 conserved hypothetical protein
          Length = 138

 Score = 68.6 bits (166), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 72/132 (54%), Gaps = 3/132 (2%)

Query: 64  LDYYLDFQARCTDDATQVQKXIEVERVYDFLAGLNNEYDQIRIQVLGRDPFPSLRQAYSF 123
           +D     +  C+ D    Q+ I+ +R+Y+FLA L+  +D IR  +L   P P +++ ++ 
Sbjct: 1   MDRRRPIKMVCSTDLHVRQEEIQKDRIYNFLAALDQIFDSIRNDLLRMKPIPGIKECFNM 60

Query: 124 LQQEETRRSAMVHRSTIDKEGLIANSAREHIQAAKSSS---SDRDQLFCDYCSKNRHTKE 180
           +Q+E  R+  M+ +  + +   +A  ++  I      +   +++D+L C +C+  RHTK+
Sbjct: 61  VQREAQRQVTMLGKRELGEGSHMAMISKTSISKTTLRAIEDAEKDKLRCSHCNGTRHTKD 120

Query: 181 FCWKLHGPPTKG 192
             +++HG   KG
Sbjct: 121 TYFEIHGKIEKG 132


>28752.m000330 conserved hypothetical protein
          Length = 317

 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/193 (24%), Positives = 85/193 (44%), Gaps = 11/193 (5%)

Query: 1   PTISRGYLLLDTTKKIWDAASLTYSQTGNYAQRYELRQKVHETKQGDLTIAQYFAKLSEL 60
           P +S  +    ++  +W A    +    N A+ ++L++ + + +Q   +  Q        
Sbjct: 52  PKVSEIFSYSTSSFDLWIAVKEMFGDMNNAARVFQLKKDLSDLRQSSRSFVQLLGLFKAK 111

Query: 61  WQKLDYYLDFQARCTDDATQVQKXIEVERVYDFLAGLNNEYDQIRIQVLGRDPFPSLRQA 120
           W +LD Y  +    T D+T +    E ++++  LA L  +YD ++  ++     PSL+  
Sbjct: 112 WNELDLYRLY----TTDSTIILYRSEEDKMFQLLAALGPDYDDLKSHLIMSPKLPSLQTV 167

Query: 121 YSFLQQEETRRSAMVHRSTID-KEGLIANSAREHIQAAKSSSSDRD-QLFCDYC-----S 173
            + +Q+EE  R  M H +T +  EG     AR  +   +     R   L C +C     S
Sbjct: 168 CNTIQREEVHRRVMNHNATANVVEGGQPAEARAFLSNTQRPYRGRQPDLKCSHCEHIGHS 227

Query: 174 KNRHTKEFCWKLH 186
              H K+ CW LH
Sbjct: 228 GIGHQKDKCWILH 240


>29908.m006211 conserved hypothetical protein
          Length = 183

 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 53/103 (51%), Gaps = 12/103 (11%)

Query: 87  VERVYDFLAGLNNEYDQIRIQVLGRDPFPSLRQAYSFLQQEETRRSAMVHRSTIDKEGLI 146
           + ++  F  GLN+ YD  R Q+L  DPFP++ +AY  L   E +R   +H          
Sbjct: 47  MNKLMQFRMGLNDCYDHTRNQILVMDPFPTVNRAYFMLLSVEKQRE--IHN--------- 95

Query: 147 ANSAREHIQAAKSSSSDRDQLFCDYCSKNRHTKEFCWKLHGPP 189
            N  ++++    +   D++  FCD+C    H ++ C+K+HG P
Sbjct: 96  -NYNKDNMSKRGAKKKDKENKFCDHCRTKGHERDTCFKIHGVP 137


>28331.m000098 conserved hypothetical protein
          Length = 143

 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 60/118 (50%), Gaps = 17/118 (14%)

Query: 81  VQKXIEVERVYDFLAGLNNEYDQIRIQVLGRDPFPSLRQAYSFLQQEETRRSAMVHRSTI 140
           V K + +   + FL G+N  Y  IR +++   PFP++ QAY+ + +EE +RS        
Sbjct: 25  VSKCLLICNTFKFLNGVNESYQAIRSRIIIMKPFPTINQAYNMVIREEKQRS-------- 76

Query: 141 DKEGLIANSAREHIQAAKSSSSDRDQLFCDYCSKNRHTKEFCWKLHG-PP----TKGR 193
               L+A+    H  AA +       L+C  C K+ H K+ C+K+ G PP    TKG+
Sbjct: 77  ----LLASPQNFHESAAMAVKKSISDLYCTQCWKSGHLKDKCYKIIGFPPDFKFTKGK 130


>30065.m001147 conserved hypothetical protein
          Length = 201

 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 49/99 (49%), Gaps = 5/99 (5%)

Query: 89  RVYDFLAGLNNEYDQIRIQVLGRDPFPSLRQAYSFLQQEETRRSAMVHRSTIDKEGLIAN 148
           R+   L GLN+ Y+ +R QVL  +P P +   YS + + E  R  +V+   +D     + 
Sbjct: 33  RIMQLLMGLNDGYEAVRSQVLLMEPLPGINNVYSMILRIEKLR--IVYNFVLDHAK--SQ 88

Query: 149 SAREHIQAAKSSSSDRDQLFCDYCSKNRHTKEFCWKLHG 187
           S R+     K    D  +  C+YC K+ H KE  +KL G
Sbjct: 89  SYRKDSGENKVYGKDLTK-HCNYCKKDGHIKENSYKLIG 126


>29854.m001092 conserved hypothetical protein
          Length = 95

 Score = 48.5 bits (114), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 1/74 (1%)

Query: 86  EVERVYDFLAGLNNEYDQIRIQVLGRDPFPSLRQAYSFLQQEETRRSAMVHRSTI-DKEG 144
           E   V+ FL GLN  Y  +R QV+   PFPSL QAY+ + +EE+ RS  +  +   D   
Sbjct: 16  EKNYVFRFLNGLNKSYQGLRSQVILLKPFPSLDQAYNMVLREESHRSMHLQSTNFTDVAA 75

Query: 145 LIANSAREHIQAAK 158
           +    +R+ ++  K
Sbjct: 76  MAVKRSRQDVKCLK 89