Jatropha Genome Database

JcCA0146281.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0146281.20 + phase: 0 
         (89 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29742.m001387 conserved hypothetical protein                          120   1e-28
30068.m002539 conserved hypothetical protein                           52   7e-08
28976.m000154 conserved hypothetical protein                           47   2e-06

>29742.m001387 conserved hypothetical protein
          Length = 88

 Score =  120 bits (302), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 64/77 (83%), Positives = 68/77 (88%), Gaps = 2/77 (2%)

Query: 1  MENKNNNSSSGFISCDKLDRVANWVGSNVASAFFASLERCSCINLNTADLEDEDDEGAKD 60
          MENKNNN+ S  ISCDKLDRVA+WVGSNVASAFFASLERCSCINLNTAD ED DDE AKD
Sbjct: 1  MENKNNNNCS-LISCDKLDRVASWVGSNVASAFFASLERCSCINLNTADPED-DDEEAKD 58

Query: 61 RPLMLCKPTIRDNPEDY 77
          RPLML KPT+RDN + Y
Sbjct: 59 RPLMLSKPTVRDNSDSY 75


>30068.m002539 conserved hypothetical protein
          Length = 95

 Score = 51.6 bits (122), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 29/56 (51%), Positives = 40/56 (71%), Gaps = 1/56 (1%)

Query: 11 GFISCDKLDRVANWVGSNVASAFFASLERCSCINLNT-ADLEDEDDEGAKDRPLML 65
            +S + L+ VANWV + V SAFF+SLER SC+N+ T    +D+++E AKDRPL L
Sbjct: 12 SIVSMENLNNVANWVSATVISAFFSSLERFSCVNIATNDPDDDDNEEEAKDRPLAL 67


>28976.m000154 conserved hypothetical protein
          Length = 108

 Score = 47.0 bits (110), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/48 (50%), Positives = 33/48 (68%), Gaps = 2/48 (4%)

Query: 8  SSSGFISCDKLDRVANWVGSNVASAFFASLERCSCINLNTADLEDEDD 55
          SS    +C KLD VA+W+ + VA+ FF+SLERC C+ ++T D  D DD
Sbjct: 30 SSCVIPACRKLDGVASWLLNGVAAVFFSSLERCYCMYIDTVD--DSDD 75