Jatropha Genome Database

JcCA0146281.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0146281.10 - phase: 0 /TE
         (228 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30000.m000388 nuclease, putative                                       61   5e-10
30162.m001269 nuclease, putative                                       56   1e-08
29970.m001031 conserved hypothetical protein                           52   2e-07
29869.m001168 conserved hypothetical protein                           52   2e-07
29641.m000379 nuclease, putative                                       51   4e-07
30005.m001269 nucleic acid binding protein, putative                   50   6e-07
48288.m000017 conserved hypothetical protein                           50   1e-06
29825.m000319 nuclease, putative                                       48   3e-06
30136.m001034 conserved hypothetical protein                           48   4e-06
30115.m001200 conserved hypothetical protein                           47   7e-06

>30000.m000388 nuclease, putative
          Length = 219

 Score = 60.8 bits (146), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 57/114 (50%), Gaps = 6/114 (5%)

Query: 83  SGLAVGGGVIRNTSGYWVTGFLVRLGTC-SSXXXXXXXXXXXXRCAWDAECRKVVVEMDS 141
           SG+A   G+ RN +G W  GF ++L  C S+              AW+A  R +++E D+
Sbjct: 66  SGIATAAGLFRNCNGQWCGGFAIKLRDCYSAFVAELFGILNGLNIAWNAGFRNIILETDN 125

Query: 142 LMSIQMIKAPANDNLRFAG----ILQQCRALLSKPCTIVFKYIYRDGNRVADAL 191
             S+  I    +D  R       ++   + +L+K   I  ++ YR+GNRVADAL
Sbjct: 126 KTSVDKIYG-DSDTKRMGDLEDLLITSIKEMLTKEWNIKLQHQYREGNRVADAL 178


>30162.m001269 nuclease, putative
          Length = 145

 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/106 (28%), Positives = 52/106 (49%)

Query: 86  AVGGGVIRNTSGYWVTGFLVRLGTCSSXXXXXXXXXXXXRCAWDAECRKVVVEMDSLMSI 145
           A GGG+IR+++G WV GF++ +G C                AW      ++VE+DS +  
Sbjct: 19  ARGGGIIRDSNGCWVGGFVIHIGACDPVGAELWAFLQGISLAWSKGIHNLIVEVDSSLVA 78

Query: 146 QMIKAPANDNLRFAGILQQCRALLSKPCTIVFKYIYRDGNRVADAL 191
             +   +      A ++  C  LL     +  K+++R+ N+VAD+L
Sbjct: 79  DWMNKKSVCKSIHANLVSACLDLLQNWWDVKIKHVFREMNQVADSL 124


>29970.m001031 conserved hypothetical protein
          Length = 132

 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 24/95 (25%), Positives = 48/95 (50%)

Query: 97  GYWVTGFLVRLGTCSSXXXXXXXXXXXXRCAWDAECRKVVVEMDSLMSIQMIKAPANDNL 156
           G W+ GF+V +G CS               AW    RK++V++DS+ ++ ++    + + 
Sbjct: 4   GMWIHGFVVNIGRCSITGAGLWGLYHGLTLAWKLGIRKLLVKVDSMCAVPLVTGEKDISS 63

Query: 157 RFAGILQQCRALLSKPCTIVFKYIYRDGNRVADAL 191
            +A ++   R++L +   +   ++YR+ N  AD L
Sbjct: 64  SYAPLVSGIRSMLGQNWQVSVSHVYREANFAADGL 98


>29869.m001168 conserved hypothetical protein
          Length = 149

 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 48/100 (48%)

Query: 84  GLAVGGGVIRNTSGYWVTGFLVRLGTCSSXXXXXXXXXXXXRCAWDAECRKVVVEMDSLM 143
           G A GGGV R+  G  V GF+  +G CS+              AW+   RK+V+ MDS +
Sbjct: 42  GSAAGGGVFRDYRGRCVVGFMCNIGYCSAIGAELWAAFHGLTIAWNKGLRKLVLAMDSTL 101

Query: 144 SIQMIKAPANDNLRFAGILQQCRALLSKPCTIVFKYIYRD 183
           ++  +   +  N   + ++  C A+LS        +++R+
Sbjct: 102 ALYWLSKRSICNSHLSNLVHSCSAILSYELDAKLVHVHRE 141


>29641.m000379 nuclease, putative
          Length = 177

 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 30/114 (26%), Positives = 57/114 (50%), Gaps = 8/114 (7%)

Query: 84  GLAVGGGVIRNTSGYWVTGFLVRLGTC-SSXXXXXXXXXXXXRCAWDAECRKVVVEMDSL 142
           G+A   G+ RN+ G W   F ++L  C S+            + AWDA  + +++E D+ 
Sbjct: 25  GIATAAGLFRNSDGQWCGAFAIKLTDCYSAFVAELCSILNGLKIAWDAGFKNIILETDNK 84

Query: 143 MSIQMIKAPANDNLRFAGILQQ-----CRALLSKPCTIVFKYIYRDGNRVADAL 191
           +S+  I    + + +  G L+       + +L+    +  ++ YR+GN+VA+AL
Sbjct: 85  ISVDTIY--GDFDTKCIGDLEDLLITSIKEMLAMAWNVKLQHQYREGNQVAEAL 136


>30005.m001269 nucleic acid binding protein, putative
          Length = 127

 Score = 50.4 bits (119), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 4/92 (4%)

Query: 77  GSILLPSGLAVGGGVIRNTSGYWVTGFLVRLGTCSSXXXXXXXXXXXXRCAWDAECRKVV 136
           G+    S +A GGG+ RN+ G+W+TGF  ++GTCS+              AW    +KV+
Sbjct: 24  GAFRASSSIAGGGGLCRNSQGHWLTGFAFKIGTCSA----LEAELWGANLAWAKGFKKVI 79

Query: 137 VEMDSLMSIQMIKAPANDNLRFAGILQQCRAL 168
           +E+DS M            L F  I ++   L
Sbjct: 80  LEVDSSMQFGSASVGIGSYLAFTPIGRETSVL 111


>48288.m000017 conserved hypothetical protein
          Length = 120

 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 57/109 (52%), Gaps = 2/109 (1%)

Query: 84  GLAVGGGVIRNTSGYWVTGFLVRLGTCSSXXXXXXXXXXXXRCAWDAECRKVVVEMDSLM 143
           G A  GG+IR+ +G W+ GF+  LG  S               AW    +KVV+E  +L 
Sbjct: 10  GRASLGGLIRDHNGDWIRGFMANLGVYSVMFAELQGIYHGLCLAWSKGIKKVVLEAYNL- 68

Query: 144 SIQMIKAPANDN-LRFAGILQQCRALLSKPCTIVFKYIYRDGNRVADAL 191
           SI+M+   A D  ++   ++++ R ++++   I   +I ++GN+ A+ L
Sbjct: 69  SIKMVLNRAKDGCIQNIALVKEIRKMITREWQIQVTHINQEGNKCANLL 117


>29825.m000319 nuclease, putative
          Length = 113

 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/103 (25%), Positives = 53/103 (51%)

Query: 84  GLAVGGGVIRNTSGYWVTGFLVRLGTCSSXXXXXXXXXXXXRCAWDAECRKVVVEMDSLM 143
           G A GGG+ RN  G W+ G++V +G C++              A     +++V+E+DS +
Sbjct: 9   GSAGGGGLFRNEFGDWIGGYVVHIGYCTAIEAELWAALQGLLIARRRGYQRLVLEVDSQL 68

Query: 144 SIQMIKAPANDNLRFAGILQQCRALLSKPCTIVFKYIYRDGNR 186
            +    + +    + A ++Q CR L  +  +   ++++++GNR
Sbjct: 69  LVAWPTSLSVLEGKCANLVQTCRGLEHEFSSFQVQHVFQEGNR 111


>30136.m001034 conserved hypothetical protein
          Length = 153

 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 7/82 (8%)

Query: 77  GSILLPSGLAVGGGVIRNTSGYWVTGFLVRLGTCSSXXXXXXXXXXXXRCAWDAECRKVV 136
           GS+ L +GLA  G +IR+  G W++GF  +LG+CS             R AWD   + V 
Sbjct: 48  GSVRLQNGLASAGSLIRSAEGSWLSGFTHKLGSCSPFKAKLWGVLDGLRLAWDKGFKHVD 107

Query: 137 VEMD-------SLMSIQMIKAP 151
           + +D       ++  + +IKAP
Sbjct: 108 LVIDPSEAIKVNIEDVHVIKAP 129


>30115.m001200 conserved hypothetical protein
          Length = 159

 Score = 47.0 bits (110), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 32/61 (52%)

Query: 77  GSILLPSGLAVGGGVIRNTSGYWVTGFLVRLGTCSSXXXXXXXXXXXXRCAWDAECRKVV 136
           GS+ L +GLA  GG+IRNT G W+ GF  +LG+CS             R AWD   +  +
Sbjct: 38  GSVKLINGLASAGGLIRNTEGSWLFGFTHKLGSCSPLGAEFWGVLDGLRLAWDKGTKAPI 97

Query: 137 V 137
            
Sbjct: 98  A 98