Jatropha Genome Database

JcCA0145861.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0145861.20 + phase: 0 /partial
         (225 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29726.m003990 conserved hypothetical protein                          310   2e-85
29726.m003991 conserved hypothetical protein                          291   2e-79

>29726.m003990 conserved hypothetical protein
          Length = 249

 Score =  310 bits (795), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 148/223 (66%), Positives = 177/223 (79%), Gaps = 3/223 (1%)

Query: 1   VLDVCALGCCSRFWSELCRSDCLWEFLTKERWPSVS--FISDFSPCSV-PVIKGWREIYI 57
           VLDVCALG CSR W ELCRSDCLWE LTK+RWPSVS  F+ + S  +  P++KGWREIY+
Sbjct: 27  VLDVCALGSCSRLWRELCRSDCLWESLTKQRWPSVSLPFLCNSSSSTTDPLVKGWREIYV 86

Query: 58  KMHREMAGKATTVIEFVEHRSLSQSLEIGDYNKAIQDLWLMRLAFKDIQMFLFKPXXXXX 117
           ++H EMAGKAT ++EFVEH S   SLE+G+Y KA+QDL+ M+LAF D+QMFLFKP     
Sbjct: 87  RLHEEMAGKATALVEFVEHSSPYDSLEVGEYYKALQDLYSMQLAFTDVQMFLFKPRLNVL 146

Query: 118 XXXXXXHYCIFCLKLPARNVMDALLSCKISEREVCVNWWKLGRWFYGFRMRDESHSRKVS 177
                 HYCIF LK+PA +VMDALLSCK+SER+VCV WWK+GRWF+GF M +E HSR VS
Sbjct: 147 LNLVGLHYCIFGLKVPAEHVMDALLSCKVSERQVCVKWWKIGRWFFGFHMTEEPHSRTVS 206

Query: 178 LTDLTTDKGEDVLGVLQRGAIHEVLRVEIFISNATTSPWSSQS 220
           L DLTT+KGE++L VL RGAIHEVLR+EI ISNA T+P S QS
Sbjct: 207 LADLTTEKGEEILKVLHRGAIHEVLRIEISISNAATTPGSCQS 249


>29726.m003991 conserved hypothetical protein
          Length = 259

 Score =  291 bits (745), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 142/215 (66%), Positives = 168/215 (78%), Gaps = 6/215 (2%)

Query: 1   VLDVCALGCCSRFWSELCRSDCLWEFLTKERWPSVSFISDFSPCSVPVIKGWREIYIKMH 60
           VLDVC+LG CSRFW ELC SDC+WE LT+ERWPS+SF+++      P+ K WREIYI+ H
Sbjct: 26  VLDVCSLGSCSRFWRELCGSDCIWESLTRERWPSLSFLNN------PISKDWREIYIRTH 79

Query: 61  REMAGKATTVIEFVEHRSLSQSLEIGDYNKAIQDLWLMRLAFKDIQMFLFKPXXXXXXXX 120
           +EM GKAT+VI FVEH SLS+SLE+G+Y KAI+DL  M+++F+DIQMFLFKP        
Sbjct: 80  KEMEGKATSVIVFVEHCSLSESLEVGEYYKAIEDLDSMQISFRDIQMFLFKPKLSVLLNL 139

Query: 121 XXXHYCIFCLKLPARNVMDALLSCKISEREVCVNWWKLGRWFYGFRMRDESHSRKVSLTD 180
              HYCIFCLK+PA ++MDA+L CKISER VCV WWKLGRW YGFRMRDESHSRKVSL D
Sbjct: 140 VGLHYCIFCLKVPAEHLMDAILFCKISERLVCVKWWKLGRWLYGFRMRDESHSRKVSLAD 199

Query: 181 LTTDKGEDVLGVLQRGAIHEVLRVEIFISNATTSP 215
           L TDKGE+VLGVL+RGAIHE   VE  I +    P
Sbjct: 200 LVTDKGEEVLGVLRRGAIHENSWVEFDICSNPNPP 234