Jatropha Genome Database

JcCA0145841.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0145841.10 - phase: 0 /partial
         (86 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30072.m000984 conserved hypothetical protein                           81   1e-16

>30072.m000984 conserved hypothetical protein
          Length = 615

 Score = 80.9 bits (198), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 41/65 (63%), Positives = 49/65 (75%), Gaps = 5/65 (7%)

Query: 23 VIHLSITKFSGSSLITY-APKDSGINFPPLADTQSVRYIRNKRLWGVVKPLQSLQPYANP 81
          VIHLSITKFS S ++ Y + KD G+  PP     S++  RN +LWGVVKPLQSLQPYANP
Sbjct: 26 VIHLSITKFSSSGILPYNSEKDVGLEIPP----SSIKNFRNPKLWGVVKPLQSLQPYANP 81

Query: 82 RSNYP 86
          RS+YP
Sbjct: 82 RSSYP 86