Jatropha Genome Database

JcCA0145721.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0145721.20 + phase: 0 /partial
         (304 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29889.m003378 nucleic acid binding protein, putative                  252   2e-67
29852.m001998 Ubiquitin carboxyl-terminal hydrolase, putative          69   3e-12
29755.m000431 conserved hypothetical protein                           69   3e-12
29333.m001109 Ubiquitin carboxyl-terminal hydrolase, putative          68   4e-12
29848.m004603 conserved hypothetical protein                           55   3e-08

>29889.m003378 nucleic acid binding protein, putative
          Length = 455

 Score =  252 bits (643), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 140/306 (45%), Positives = 188/306 (61%), Gaps = 15/306 (4%)

Query: 3   SNMTMQISEKIPPYYAVEIQKFSAPKDYQVTKYESEVFEAQEYKWKLVVHLKGSKSKD-- 60
            N    +S+  P +Y V+IQ FS      V KYES  FEA  YKWKLV++ KG+KSK+  
Sbjct: 157 GNGVSTMSDASPTHYTVKIQLFSL---LAVEKYESGSFEAGGYKWKLVLYPKGNKSKNVM 213

Query: 61  -HISLYLALADT--LEPHILVYAVFRLYLLDRKNHNHLIRQLPDSEGKKICFHKRKLEWG 117
            H+SLY+A+AD+  L+    V+ VFRL+LLD+   N+LI  LP   GK+  FH  +LEWG
Sbjct: 214 EHLSLYIAMADSSNLQLGWEVHVVFRLFLLDQIRDNYLI--LP---GKECRFHGFRLEWG 268

Query: 118 FDKFINVAAFRDPSNGYLVGDACVVGVEVISADKATITGKEESLSINKQGHVAKHLWKIE 177
           FD+ I +A  +D  NGYLV D CV G EV    K + TGK E LS+ K    +K+LW+ E
Sbjct: 269 FDQLIPLATLKDTKNGYLVEDTCVFGAEVF-VRKESCTGKGECLSMIKSSSTSKNLWRFE 327

Query: 178 KFSKL-SETRTSEIFTDGIQEWKIELHPEGTDLGKMEYLSLYVCLGDDNAIDPSSKIYTH 236
            FSKL +E   S+ F  G Q WKI+L+P+G  LG   +LSL++ L D  AI P  KI   
Sbjct: 328 NFSKLDAECNDSKTFVAGDQRWKIQLYPKGKGLGSGTHLSLFLALADLTAITPGFKILAD 387

Query: 237 VTLRVLDQLKDKHIIAEENFWFDSTRSRHGWSRFLPLDYLHRFKKSLQFEDVLFVDAEVK 296
            TLR+LDQ +  H+  + NFWF ++ S  GWSRF PLD L+    +  F+D    +AE+ 
Sbjct: 388 FTLRILDQSRGSHLFGKANFWFSASSSVCGWSRFYPLDQLYASSNAYLFKDTCLGEAEIT 447

Query: 297 VLAVTN 302
           VL +T+
Sbjct: 448 VLGITD 453


>29852.m001998 Ubiquitin carboxyl-terminal hydrolase, putative
          Length = 1109

 Score = 68.9 bits (167), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 41/112 (36%), Positives = 67/112 (59%), Gaps = 8/112 (7%)

Query: 37  SEVFEAQEYKWKLVVHLKGSKSKDHISLYLALAD--TLEPHILVYAVFRLYLLDRKNHNH 94
           S+VF    YKW++++  KG+ + DH+S+YL +AD  TL      YA F L ++++ +  +
Sbjct: 72  SDVFIVGGYKWRILIFPKGN-NVDHLSMYLDVADSATLPYGWSRYAQFSLCVVNQIHQKY 130

Query: 95  LIRQLPDSEGKKICFHKRKLEWGFDKFINVAAFRDPSNGYLVGDACVVGVEV 146
            IR+  D++ +   F+ R+ +WGF  F+ +    DP  GYLV D CVV  +V
Sbjct: 131 SIRK--DTQHQ---FNARESDWGFTSFMPLGELYDPGRGYLVNDTCVVEADV 177



 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 72/135 (53%), Gaps = 5/135 (3%)

Query: 170 AKHLWKIEKFSKLSETRT-SEIFTDGIQEWKIELHPEGTDLGKMEYLSLYVCLGDDNAID 228
           A+  W I+ FS+L+  +  S++F  G  +W+I + P+G ++   ++LS+Y+ + D   + 
Sbjct: 53  ARFTWTIDNFSRLNTKKLYSDVFIVGGYKWRILIFPKGNNV---DHLSMYLDVADSATLP 109

Query: 229 PSSKIYTHVTLRVLDQLKDKHIIAEE-NFWFDSTRSRHGWSRFLPLDYLHRFKKSLQFED 287
                Y   +L V++Q+  K+ I ++    F++  S  G++ F+PL  L+   +     D
Sbjct: 110 YGWSRYAQFSLCVVNQIHQKYSIRKDTQHQFNARESDWGFTSFMPLGELYDPGRGYLVND 169

Query: 288 VLFVDAEVKVLAVTN 302
              V+A+V V  V +
Sbjct: 170 TCVVEADVAVRRVID 184


>29755.m000431 conserved hypothetical protein
          Length = 474

 Score = 68.6 bits (166), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 43/128 (33%), Positives = 75/128 (58%), Gaps = 11/128 (8%)

Query: 21  IQKFSAPKDYQVTKYESEVFEAQEYKWKLVVHLKGSKSKDHISLYLALADTLE-PHILVY 79
           I+KFS        K  SE+F A + KW+L++  KG+ + DH+S+Y+ +AD+   P+    
Sbjct: 13  IEKFS---KLTAKKVYSEIFTAGKSKWRLLIFPKGN-NVDHLSIYIEVADSTSLPNGWSR 68

Query: 80  -AVFRLYLLDRKNHNHLIRQLPDSEGKKICFHKRKLEWGFDKFINVAAFRDPSNGYLVGD 138
            A F L ++++ N++  +R+  D++     F+ R+ +WGF  F+ ++  +DP+ GYLV D
Sbjct: 69  DAAFGLAVINQFNNSATVRK--DTQH---VFNARESDWGFTSFLPLSKLKDPAVGYLVND 123

Query: 139 ACVVGVEV 146
              V  EV
Sbjct: 124 TLTVETEV 131



 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 68/132 (51%), Gaps = 5/132 (3%)

Query: 171 KHLWKIEKFSKLSETRT-SEIFTDGIQEWKIELHPEGTDLGKMEYLSLYVCLGDDNAIDP 229
           K  WKIEKFSKL+  +  SEIFT G  +W++ + P+G +   +++LS+Y+ + D  ++  
Sbjct: 8   KFTWKIEKFSKLTAKKVYSEIFTAGKSKWRLLIFPKGNN---VDHLSIYIEVADSTSLPN 64

Query: 230 SSKIYTHVTLRVLDQLKDKHIIAEEN-FWFDSTRSRHGWSRFLPLDYLHRFKKSLQFEDV 288
                    L V++Q  +   + ++    F++  S  G++ FLPL  L          D 
Sbjct: 65  GWSRDAAFGLAVINQFNNSATVRKDTQHVFNARESDWGFTSFLPLSKLKDPAVGYLVNDT 124

Query: 289 LFVDAEVKVLAV 300
           L V+ EV V  V
Sbjct: 125 LTVETEVHVRNV 136


>29333.m001109 Ubiquitin carboxyl-terminal hydrolase, putative
          Length = 1120

 Score = 68.2 bits (165), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 49/160 (30%), Positives = 85/160 (53%), Gaps = 21/160 (13%)

Query: 1   VASNMTMQISEKIPPYYAVEIQKFSAPKDYQVT------------KYESEVFEAQEYKWK 48
           V     M++++ + P   VE Q    P   + T            K+ S+VF    YKW+
Sbjct: 24  VEGPQPMEVAQ-VEPASTVENQPVEDPPSMKFTWTIENFSRLNTKKHYSDVFVVGGYKWR 82

Query: 49  LVVHLKGSKSKDHISLYLALAD--TLEPHILVYAVFRLYLLDRKNHNHLIRQLPDSEGKK 106
           +++  KG+ + DH+S+YL ++D  TL      YA F L ++++ ++ + IR+  D++ + 
Sbjct: 83  ILIFPKGN-NVDHLSMYLDVSDSSTLPYGWSRYAQFSLAVVNQIHNKYSIRK--DTQHQ- 138

Query: 107 ICFHKRKLEWGFDKFINVAAFRDPSNGYLVGDACVVGVEV 146
             F+ R+ +WGF  F+ ++   DPS GYLV D  +V  EV
Sbjct: 139 --FNARESDWGFTSFMPLSDLYDPSRGYLVNDTVIVEAEV 176



 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 73/132 (55%), Gaps = 5/132 (3%)

Query: 171 KHLWKIEKFSKLSETR-TSEIFTDGIQEWKIELHPEGTDLGKMEYLSLYVCLGDDNAIDP 229
           K  W IE FS+L+  +  S++F  G  +W+I + P+G ++   ++LS+Y+ + D + +  
Sbjct: 53  KFTWTIENFSRLNTKKHYSDVFVVGGYKWRILIFPKGNNV---DHLSMYLDVSDSSTLPY 109

Query: 230 SSKIYTHVTLRVLDQLKDKHIIAEE-NFWFDSTRSRHGWSRFLPLDYLHRFKKSLQFEDV 288
               Y   +L V++Q+ +K+ I ++    F++  S  G++ F+PL  L+   +     D 
Sbjct: 110 GWSRYAQFSLAVVNQIHNKYSIRKDTQHQFNARESDWGFTSFMPLSDLYDPSRGYLVNDT 169

Query: 289 LFVDAEVKVLAV 300
           + V+AEV V  V
Sbjct: 170 VIVEAEVAVRKV 181


>29848.m004603 conserved hypothetical protein
          Length = 1575

 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 54/235 (22%), Positives = 102/235 (43%), Gaps = 28/235 (11%)

Query: 9   ISEKIPPYYAVEIQKFSAPKDY-QVTKYESEVFEAQEYKWKLVVHLKGSKSKDHISLYLA 67
           +S+ +   +  ++  FS  K+  +  K  S VF A E   ++ V+       D++S+ L 
Sbjct: 253 VSDVLSGKFTWKVHNFSLFKEMIKTQKIMSPVFPAGECNLRISVYQSSVNGHDYLSMCLE 312

Query: 68  LADTLEPHIL---VYAVFRLYLLDRK-NHNHLIRQLPDSEGKKICFHKR--KLEWGFDKF 121
             DT +  +     + +FR+ LL++K   NH+ R   DS G+    +K       G++ +
Sbjct: 313 SKDTEKTVVSDRSCWCLFRMSLLNQKPGSNHMHR---DSYGRFAADNKTGDNTSLGWNDY 369

Query: 122 INVAAFRDPSNGYLVGDACVVGVEV--------ISADKATITGKEESLSINKQGHVAKHL 173
           + +  F    +G+LV D  V              S +   I G+  S +    GH+ K  
Sbjct: 370 MKMCDFVGADSGFLVDDTAVFSTSFHVIKEFSSFSKNGGLIGGRSGSGARKSDGHMGKFT 429

Query: 174 WKIEKFSKLSE----------TRTSEIFTDGIQEWKIELHPEGTDLGKMEYLSLY 218
           W+IE F++L +             S  F  G ++ ++ ++P G  +     L++Y
Sbjct: 430 WRIENFTRLKDLLKKRKITGLCIKSRRFQIGNRDCRLIVYPRGGGMHMYFLLTVY 484