Jatropha Genome Database

JcCA0145721.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0145721.10 + phase: 1 /partial
         (154 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29889.m003377 neurobeachin, putative                                  206   4e-54
29917.m001945 katanin P80 subunit, putative                            47   5e-06

>29889.m003377 neurobeachin, putative
          Length = 1575

 Score =  206 bits (523), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 115/174 (66%), Positives = 126/174 (72%), Gaps = 25/174 (14%)

Query: 1    CGSDKTQDDGTFPSPSWIAAGLSSGHCRLFDLRSGNVIASWRAHDGYVTKLAAPEDYLLV 60
            CGSDKT  DGTF S SWIA+GLSSGHCR+FD+RSGNV+ASWRAHDGYVTKLAAPED+LLV
Sbjct: 1407 CGSDKTPADGTFASSSWIASGLSSGHCRIFDVRSGNVVASWRAHDGYVTKLAAPEDHLLV 1466

Query: 61   SSSLDRTLRIWDLR-----SPLFLKVIQMGYPVSLFGV--KMLFRFPKIRLGF------- 106
            SSSLDRTLRIWDLR      P   K    G  VS F V  + +    K ++G        
Sbjct: 1467 SSSLDRTLRIWDLRRNWPPQPTVFKGHTDG--VSGFCVWGQDVISISKNKIGLSTLSRSA 1524

Query: 107  ------QLYPDLLKKLYAVDHGMKNLSVLSSISILPFSRLFVVGTEDGYLRICC 154
                  Q+ P   +KLYA DHGMKNLSVLSSISILPFSRLFVVGTEDGYLRICC
Sbjct: 1525 EEDGQQQVVP---QKLYAADHGMKNLSVLSSISILPFSRLFVVGTEDGYLRICC 1575


>29917.m001945 katanin P80 subunit, putative
          Length = 936

 Score = 46.6 bits (109), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 29/103 (28%), Positives = 53/103 (51%), Gaps = 5/103 (4%)

Query: 13  PSPSWIAAGLSSGHCRLFDLRSGNVIASWRAHDGYVTKLA-APEDYLLVSSSLDRTLRIW 71
           P   W+ +G      +++DL +G ++  ++ H+G++  L   P ++LL + S DRT++ W
Sbjct: 163 PDGRWVVSGGLDNVVKVWDLTAGKLLHDFKFHEGHIRSLDFHPLEFLLATGSADRTVKFW 222

Query: 72  DLRSPLFLKVIQMGYPVSLFGVKMLFRFPKIRLGFQLYPDLLK 114
           DL +    ++I    P +  GV+ +   P  R  F    D LK
Sbjct: 223 DLET---FELIGSARPEAT-GVRAISFHPDGRTLFCGLDDSLK 261