Jatropha Genome Database

JcCA0144561.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0144561.10 - phase: 0 
         (694 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30226.m002028 Cleavage and polyadenylation specificity factor 73...   723   0.0  
29673.m000947 cleavage and polyadenylation specificity factor, p...   307   1e-83
29983.m003178 cleavage and polyadenylation specificity factor, p...   147   2e-35

>30226.m002028 Cleavage and polyadenylation specificity factor 73
           kDa subunit, putative
          Length = 361

 Score =  723 bits (1865), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/350 (97%), Positives = 344/350 (98%)

Query: 1   MASTGQSQSLKRRDAPVTREGDQLTVTPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYS 60
           M ST QS SLKRRDAPVTREGD LTVTPLGAGNEVGRSCVYMSYKGK +LFDCGIHPAYS
Sbjct: 1   MGSTAQSPSLKRRDAPVTREGDVLTVTPLGAGNEVGRSCVYMSYKGKIVLFDCGIHPAYS 60

Query: 61  GMAALPYFDEIDPSTIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKVIYKLLLT 120
           GMAALPYFDEIDPSTIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATK IYKLLLT
Sbjct: 61  GMAALPYFDEIDPSTIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLT 120

Query: 121 DYVKVSKVSIEDMLFDEQDINRSMDKIEVIDFHQTVEVNGIKFWCYTAGHVLGAAMFMVD 180
           DYVKVSKVSIEDMLFDEQDINRSMDKIEVIDFHQTVEVNGIKFWCYTAGHVLGAAMFMVD
Sbjct: 121 DYVKVSKVSIEDMLFDEQDINRSMDKIEVIDFHQTVEVNGIKFWCYTAGHVLGAAMFMVD 180

Query: 181 IAGVRVLYTGDYSREEDRHLRAAEMPQFSPDICIIESTYGVQLHQPRHIREKRFTDVIHS 240
           IAGVR+LYTGDYSREEDRHLRAAEMPQFSPDICIIESTYGVQLHQPRHIREKRFTDVIHS
Sbjct: 181 IAGVRLLYTGDYSREEDRHLRAAEMPQFSPDICIIESTYGVQLHQPRHIREKRFTDVIHS 240

Query: 241 TISQGGRVLIPAFALGRAQELLLILDEFWANHPELHNVPIYYASPLAKKCMTVYQTYILS 300
           TISQGGRVLIPAFALGRAQELLLILDE+W+NHPELHNVPIYYASPLAKKCMTVYQTYILS
Sbjct: 241 TISQGGRVLIPAFALGRAQELLLILDEYWSNHPELHNVPIYYASPLAKKCMTVYQTYILS 300

Query: 301 MNERIRNQFANSNPFKFKHISPLNSIEDFTDVGPSVVMASPGGLQSGLSR 350
           MNERIRNQFANSNPFKFKHISPLNSIEDFTDVGPSVVMASPGGLQSGLSR
Sbjct: 301 MNERIRNQFANSNPFKFKHISPLNSIEDFTDVGPSVVMASPGGLQSGLSR 350


>29673.m000947 cleavage and polyadenylation specificity factor,
           putative
          Length = 963

 Score =  307 bits (786), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 167/446 (37%), Positives = 253/446 (56%), Gaps = 20/446 (4%)

Query: 29  LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPS-----TIDVLLITH 83
           LGAG EVG+SCV ++  GK I+FDCG+H  Y      P F  I  S      +  ++ITH
Sbjct: 8   LGAGQEVGKSCVVVTINGKRIMFDCGMHMGYDDHRRYPDFSLISKSGDFDSALHCVIITH 67

Query: 84  FHLDHAASLPYFLEKTTFKGRVFMTHATKVIYKLLLTDYVKVS-KVSIEDMLFDEQDINR 142
           FHLDH  +LPYF E   + G V+MT+ TK +  L+L DY KV      E+  F    I +
Sbjct: 68  FHLDHVGALPYFTEVCGYNGPVYMTYPTKALSPLMLEDYRKVMVDRRGEEEQFTADHIKQ 127

Query: 143 SMDKIEVIDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLR 201
            ++K+  +D  QTV+V+  ++   Y AGHVLGAAMF   +    ++YTGDY+   DRHL 
Sbjct: 128 CLNKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187

Query: 202 AAEMPQFSPDICIIESTYGVQLHQPRHIREKRFTDVIHSTISQGGRVLIPAFALGRAQEL 261
           AA++ +   D+ I ESTY   +   ++ RE+ F  V+H  ++ GG+VLIP FALGRAQEL
Sbjct: 188 AAQIDRLQLDLLITESTYATTIRDSKYAREREFLKVVHKCVAGGGKVLIPTFALGRAQEL 247

Query: 262 LLILDEFWANHPELHN--VPIYYASPLAKKCMTVYQTYILSMNERIRNQFANSNPFKFKH 319
            L+LD++W    E  N  VPIY+++ L  +    Y+  I   +++I+  + + N F FK+
Sbjct: 248 CLLLDDYW----ERMNLKVPIYFSAGLTIQANMYYKMLIGWTSQKIKETYTSRNAFDFKN 303

Query: 320 ISPLN-SIEDFTDVGPSVVMASPGGLQSGLSRQLFDMWCSDKKNACVIPGYVVEGTLA-K 377
           +   + S+ D    GP V+ A+PG +  G S ++F  W   + N   +PGY V GT+  K
Sbjct: 304 VYTFDRSLLDAP--GPCVLFATPGMISGGFSLEVFKRWAPCEMNLVTLPGYCVAGTIGHK 361

Query: 378 TIINEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLRELMPPNIILVHGEANEMG 437
            +  +P ++ L       +  Q+H +SFS H D       ++ L P ++ILVHGE  +M 
Sbjct: 362 LMSGKPSKINLDKDTQIDVRCQIHQLSFSPHTDAKGIMDLVKFLSPKHVILVHGEKPKMA 421

Query: 438 RLKQKLITEFADGNTKIVTPKNCQSV 463
            LK+++ +E      +   P NC+++
Sbjct: 422 SLKERIQSEL---EIQCYVPANCETL 444


>29983.m003178 cleavage and polyadenylation specificity factor,
           putative
          Length = 740

 Score =  147 bits (371), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 115/388 (29%), Positives = 193/388 (49%), Gaps = 44/388 (11%)

Query: 21  GDQLTVTPL-GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPS----- 74
           G  + VTPL G  NE   S + +S     +L DCG            + D  DPS     
Sbjct: 2   GTSVQVTPLNGVYNENPLSYL-ISIDNFNLLIDCG------------WNDHFDPSLLQPL 48

Query: 75  -----TIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKVIYKL-LLTDYVK-VSK 127
                TID +L++H    H  +LPY +++      V+   +T+ +Y+L LLT Y + +S+
Sbjct: 49  SRVASTIDAVLLSHSDTLHLGALPYAMKQLGLSAPVY---STEPVYRLGLLTMYDQYLSR 105

Query: 128 VSIEDM-LFDEQDINRSMDKIEVIDFHQTVEVNG----IKFWCYTAGHVLGAAMFMVDIA 182
            ++ +  LF   DI+ +   I  + + Q   ++G    I    + AGH+LG  ++ +   
Sbjct: 106 KAVSEFDLFSLDDIDSAFQNITRLTYSQNHHLSGKGEGIVIAPHVAGHLLGGTVWKITKD 165

Query: 183 GVRVLYTGDYSREEDRHLRAAEMPQF-SPDICIIESTYGVQLHQPRHIREKRFTD-VIHS 240
           G  V+Y  D++  ++RHL    +  F  P + I ++   +    PR  R+K F +  I  
Sbjct: 166 GEDVVYAVDFNHRKERHLNGTVLESFVRPAVLITDAYNALSNQPPRQQRDKEFLEKTILK 225

Query: 241 TISQGGRVLIPAFALGRAQELLLILDEFWANHPELHNVPIYYASPLAKKCMTVYQTYILS 300
           T+  GG VL+P    GR  ELLLIL++FWA+   L N PI++ + ++   +   ++++  
Sbjct: 226 TLEAGGNVLLPVDTAGRVLELLLILEQFWAH--RLLNYPIFFLTYVSSSTIDYVKSFLEW 283

Query: 301 MNERIRNQFANS--NPFKFKHISPL---NSIEDFTDVGPSVVMASPGGLQSGLSRQLFDM 355
           M++ I   F  S  N F  KH++ L   N +++  +V P VV+AS   L++G S  +F  
Sbjct: 284 MSDSIAKSFETSRDNAFLLKHVTLLINKNELDNAPNV-PKVVLASMASLEAGFSHDIFVE 342

Query: 356 WCSDKKNACVIPGYVVEGTLAKTIINEP 383
           W +D KN  +       GTLA+ +  +P
Sbjct: 343 WAADVKNLVLFTERGQFGTLARMLQADP 370