Jatropha Genome Database

JcCA0144471.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0144471.10 + phase: 0 
         (180 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29667.m000353 conserved hypothetical protein                          243   3e-65

>29667.m000353 conserved hypothetical protein
          Length = 196

 Score =  243 bits (620), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 123/176 (69%), Positives = 141/176 (80%), Gaps = 1/176 (0%)

Query: 6   QQQPPQGASYTYWVREATADAAPLPLPKKLSTNDLITSQSQPPTL-GSVWNRAGTWEEKN 64
           +++  +GASY YWVRE  ADAAPLPLPKKLS ND++ + +      GSVWNRAGTWEEK+
Sbjct: 3   EEEKKEGASYRYWVRETKADAAPLPLPKKLSPNDVVLNNTNNNNTLGSVWNRAGTWEEKS 62

Query: 65  LNKWATDRIKELLVSVGSLEFSCGKAEITEVSKCLGDAFLVTVRNKKRVGYTYELTLKIK 124
           LNKWATDRIKELLV+VGSLEFS GKAEI+EVSKC GDAFLVTVRNKKRVGYTYELTLKIK
Sbjct: 63  LNKWATDRIKELLVTVGSLEFSAGKAEISEVSKCSGDAFLVTVRNKKRVGYTYELTLKIK 122

Query: 125 GEWTVKEEKKNVKAHIDIPEFSFGELDDLQVRSLFSFKCLNVQSELCKVMNGMSLL 180
           GEWTVKEEKK VKA IDIPEFS GELDDLQ+    S +   +Q +  ++   + L 
Sbjct: 123 GEWTVKEEKKTVKADIDIPEFSIGELDDLQMEVRLSDEKDLLQEDKLQINQDLKLF 178