Jatropha Genome Database

JcCA0143221.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0143221.10 - phase: 0 /partial
         (254 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30170.m014157 nucleic acid binding protein, putative                  385   e-108
27471.m000424 conserved hypothetical protein                          151   4e-37
29647.m001998 Homeobox protein LUMINIDEPENDENS, putative               50   8e-07

>30170.m014157 nucleic acid binding protein, putative
          Length = 461

 Score =  385 bits (990), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 197/256 (76%), Positives = 213/256 (83%), Gaps = 5/256 (1%)

Query: 1   VRLFLSEESPSQVGLGAQDHLQAKASWLSHPAGIAADDILPPGFEGGQPANQLHIKLSDI 60
           +RLFL+EESPSQVGLGAQDHLQAKASWLSHPAG   DDILPPGFEGG P NQ ++KLSDI
Sbjct: 30  MRLFLTEESPSQVGLGAQDHLQAKASWLSHPAGTVGDDILPPGFEGGAPVNQSYVKLSDI 89

Query: 61  PVIKWKCPPRFVLDLTWQVVAGEESKEVEVHNQREMRVLEAVYPRPSAIPPNPAFSAELE 120
           PVIKW+CPPRFVLDLTWQVVAGEESK+VEV NQREMRVLEAVYPRPSAIPPNPAF AE+E
Sbjct: 90  PVIKWRCPPRFVLDLTWQVVAGEESKDVEVQNQREMRVLEAVYPRPSAIPPNPAFPAEVE 149

Query: 121 DLRLNDHQVPLIPITPIEDEDAVDAPSEFRGPYNAPVSSQSQLLASGILPPQYSIPAISN 180
           D R  DHQVP IPITPIEDEDA DA S+FRGP   PVSSQS LLA     PQ SIP+ISN
Sbjct: 150 DFRQGDHQVPQIPITPIEDEDATDATSDFRGPQIVPVSSQSHLLAPL---PQRSIPSISN 206

Query: 181 TPVNEKPAAGAL--LGVEPDVIXXXXXXXXXINKSNDQGSLIDRDLLVKILNNPRLIKKL 238
           T +NEKP AG L   GVEPDV+         +NKSN+QGSLID DLL+KILNNP+LI+KL
Sbjct: 207 TRINEKPVAGVLPVPGVEPDVVAAASAAFAAVNKSNEQGSLIDHDLLIKILNNPKLIEKL 266

Query: 239 AQDYGAASNVQNTPKP 254
            QDYGAASN QN PKP
Sbjct: 267 VQDYGAASNGQNVPKP 282


>27471.m000424 conserved hypothetical protein
          Length = 497

 Score =  151 bits (381), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 103/233 (44%), Positives = 130/233 (55%), Gaps = 13/233 (5%)

Query: 27  WLSHPAGIAADDILPPGFEGGQPANQLHIKLSDIPVIKWKCPPRFVLDLTWQVVAGEESK 86
            L H  G    D LPPGF G    N L  K S+IP I WKCPP+ VL   W V AGEES 
Sbjct: 1   MLHHLPGKEISD-LPPGF-GDSHLNHLKEKSSNIPRIAWKCPPKVVLSHNWHVAAGEEST 58

Query: 87  EVEVHNQREMRVLEAVYPRPSAIPPNPAFSAELEDLRLNDHQVPLIPITPIEDEDAVDAP 146
           E E    RE+RVLEAV+PR SAIPP+P+ S ++E+   ND+  P IP+TPIE+   VD P
Sbjct: 59  EAEAQKVREIRVLEAVFPRQSAIPPSPSISLDVEEEFYNDNFTPRIPVTPIEEGVVVDLP 118

Query: 147 SEFRGPYNAPVSSQSQLLASGILPPQYSIP--AISNTPVNEKPAAGA-LLGVEPDV---- 199
           S+   P N   + Q       ++    S+P  A  +TPV E PA+    LGV PD+    
Sbjct: 119 SDLSAPLNTLSNPQLPAFPRDLV----SVPNSAERDTPVLEPPASEKPKLGVLPDLGADV 174

Query: 200 IXXXXXXXXXINKSNDQGSLIDRDLLVKILNNPRLIKKLAQDYGAASNVQNTP 252
           +         I KS ++GSLID  LLVKILN+P +I KL     A  ++  TP
Sbjct: 175 VTAASAAVTAIMKSMEKGSLIDTGLLVKILNDPEMIDKLINGREAPLSMTRTP 227


>29647.m001998 Homeobox protein LUMINIDEPENDENS, putative
          Length = 1021

 Score = 50.4 bits (119), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 41/83 (49%), Gaps = 1/83 (1%)

Query: 63  IKWKCPPRFVLDLTWQVVAGEESKEVEVHNQREMRVLEAVYPRPSAIPPNPAFSAELEDL 122
           I W+ PP   L+  W+V  GE SKEV+V   R  R +E +Y     IP NP    ++E +
Sbjct: 531 IPWQTPPEIKLNDLWRVGNGENSKEVDVQKNRNRREIEIIYRTVQDIPANPKAPWDVE-M 589

Query: 123 RLNDHQVPLIPITPIEDEDAVDA 145
             +D   P IPI    D D  + 
Sbjct: 590 DYDDTLTPEIPIEQPPDADVAET 612