Jatropha Genome Database

JcCA0143091.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0143091.30 + phase: 0 
         (191 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30147.m014489 conserved hypothetical protein                          231   2e-61

>30147.m014489 conserved hypothetical protein
          Length = 196

 Score =  231 bits (589), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 134/204 (65%), Positives = 140/204 (68%), Gaps = 21/204 (10%)

Query: 1   MEDTVMSSITLPKTTQELALEGQKHLEETIQAAYQILSSMNDELCNPNLWXXXXXXXXXX 60
           MEDT MS+IT  KTTQELA+EGQKHLEETIQAAYQILSSMNDELCNP LW          
Sbjct: 1   MEDTTMSTITQSKTTQELAMEGQKHLEETIQAAYQILSSMNDELCNPTLWSTTSSSNNTT 60

Query: 61  XXXXXXXPITA-----------ATNGDVXXXXXXXXX--XXXXXXXXXXTCNGALDEARF 107
                  PI+A             NGD                      T NGALDEARF
Sbjct: 61  S------PISAPANSNSLSQNGVVNGDSVSDAVVAHHFDGTGTGVVGGGTGNGALDEARF 114

Query: 108 RYKNSVAALREVLAAIPNSQKAKAFETTNSSASPADHAEVEKLEEQASNLRKELVNKNAC 167
           RYKNSVAALREVLAAIPNS KA +FET  SS+SPAD A+VEKLEEQASNLRKEL NKNA 
Sbjct: 115 RYKNSVAALREVLAAIPNSHKAISFET--SSSSPADEADVEKLEEQASNLRKELFNKNAY 172

Query: 168 LKLLIDQLRDLITDISTWQSPCSV 191
           LKLLIDQLRDLITDISTWQSPCSV
Sbjct: 173 LKLLIDQLRDLITDISTWQSPCSV 196