Jatropha Genome Database

JcCA0143091.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0143091.10 - phase: 0 
         (228 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30147.m014490 Thylakoid lumenal 17.9 kDa protein, chloroplast pr...   325   1e-89

>30147.m014490 Thylakoid lumenal 17.9 kDa protein, chloroplast
           precursor, putative
          Length = 229

 Score =  325 bits (833), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 169/222 (76%), Positives = 179/222 (80%), Gaps = 2/222 (0%)

Query: 1   MSLIGHVVPPRPSASSKNPIQKVSPRFHFLNFSLEIPTPKPIXXXXXXXXXXXXXXXXPL 60
           MSLIGHV+ P   ++SKN  QK S   HF  FSL I  PKPI                PL
Sbjct: 1   MSLIGHVLLPLHPSTSKNSSQKASNYPHFPKFSLPILAPKPILFTNLLSLALTVTLSSPL 60

Query: 61  PSLAIPSPNSLS-SPVIP-TTPFSQSKNLILGPEDGKIRPCPSTNPSCVSTNPKSSSFAF 118
           PSLAIPSPNSLS SP++P TTPFSQSKNL  G EDGKIRPCPSTNPSC+STNPK+S FAF
Sbjct: 61  PSLAIPSPNSLSASPLLPPTTPFSQSKNLATGLEDGKIRPCPSTNPSCISTNPKTSQFAF 120

Query: 119 PLTIPDDSTDNAIQKLQEAILKTQRNAKIQVIEDAPNGTYLQAEVDGGFGRDVLEFLVKG 178
           PLTIP DST+NAIQKLQEAILKTQ NAKIQVIE+ PNG YLQAEVDGGFGRDVLEFLVKG
Sbjct: 121 PLTIPGDSTENAIQKLQEAILKTQGNAKIQVIENTPNGQYLQAEVDGGFGRDVLEFLVKG 180

Query: 179 DVVAYRCMATKVTYVYPFTTALGDSKGQEERMKKIIEQLGWY 220
           DVVAYR MATKVTYVYPFTTA GDSKGQEERMKKII+QLGWY
Sbjct: 181 DVVAYRSMATKVTYVYPFTTAFGDSKGQEERMKKIIDQLGWY 222