Jatropha Genome Database

JcCA0142891.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0142891.20 - phase: 0 /pseudo/partial
         (70 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30147.m014102 transcription regulator, putative                        97   1e-21
29822.m003497 transcription regulator, putative                        82   6e-17
29736.m002007 transcription regulator, putative                        82   8e-17
30147.m014106 DNA binding protein, putative                            50   2e-07

>30147.m014102 transcription regulator, putative
          Length = 91

 Score = 97.4 bits (241), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 48/50 (96%), Positives = 50/50 (100%)

Query: 21 QVSAAKVLQETCNYIRNLHREVDDLSERLSELLATTDTAQAAIIRNLLMQ 70
          +VSAAKVLQETCNYIR+LHREVDDLSERLSELLATTDTAQAAIIRNLLMQ
Sbjct: 42 KVSAAKVLQETCNYIRSLHREVDDLSERLSELLATTDTAQAAIIRNLLMQ 91


>29822.m003497 transcription regulator, putative
          Length = 90

 Score = 81.6 bits (200), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 40/51 (78%), Positives = 47/51 (92%), Gaps = 2/51 (3%)

Query: 21 QVSAAKVLQETCNYIRNLHREVDDLSERLSELLAT--TDTAQAAIIRNLLM 69
          +VSA+KVLQETCNYIRNLHREVDDLSERLS+LLAT   D+ +AAIIR+L+M
Sbjct: 40 KVSASKVLQETCNYIRNLHREVDDLSERLSQLLATIDADSPEAAIIRSLIM 90


>29736.m002007 transcription regulator, putative
          Length = 93

 Score = 81.6 bits (200), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 40/52 (76%), Positives = 49/52 (94%), Gaps = 2/52 (3%)

Query: 21 QVSAAKVLQETCNYIRNLHREVDDLSERLSELLATT--DTAQAAIIRNLLMQ 70
          +VSA+KVLQETCNYI++LHREVDDLS+RLSELLA+T  D+AQAAIIR+L M+
Sbjct: 42 KVSASKVLQETCNYIKSLHREVDDLSDRLSELLASTDSDSAQAAIIRSLFME 93


>30147.m014106 DNA binding protein, putative
          Length = 89

 Score = 50.1 bits (118), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 23/39 (58%), Positives = 32/39 (82%)

Query: 21 QVSAAKVLQETCNYIRNLHREVDDLSERLSELLATTDTA 59
          +VS +K+LQETC+YIR+L  E DDLSE+LS+LL + + A
Sbjct: 38 RVSVSKILQETCSYIRSLQSEADDLSEKLSQLLDSFNIA 76