Jatropha Genome Database

JcCA0142871.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0142871.10 - phase: 0 /pseudo/partial
         (201 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29848.m004687 conserved hypothetical protein                          238   2e-63
30027.m000848 conserved hypothetical protein                           50   8e-07

>29848.m004687 conserved hypothetical protein
          Length = 544

 Score =  238 bits (606), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 116/152 (76%), Positives = 126/152 (82%), Gaps = 1/152 (0%)

Query: 1   MFDESKFDVQLKLWALRIPREHCKVATRLLNGYLLDKARVKPITEDPTCEKNRFMILSER 60
           M DESKFDVQLKLWALRIPRE CK ATRLLNGYLLDKARVKPITEDPT EKNR++ILSE 
Sbjct: 1   MLDESKFDVQLKLWALRIPRELCKTATRLLNGYLLDKARVKPITEDPTSEKNRYLILSEA 60

Query: 61  VQNTDLTDIPVEKLDELKKLCEIEVVPYSMTLGYSYWSADHILKQILPPGVEIPSSFETI 120
           VQN DL+DI  E+++ELKKLC+IEVVPYSMTLGYSYW ADHILKQILPPGVEIPSSFETI
Sbjct: 61  VQNNDLSDISAERIEELKKLCKIEVVPYSMTLGYSYWGADHILKQILPPGVEIPSSFETI 120

Query: 121 VKYSIYVVMYLGFQFMCSSLY-TYIS*RVLHF 151
           VKY  YVV  L      +  +  +IS R  HF
Sbjct: 121 VKYPFYVVFVLSSMHALALFFQAHISNRAFHF 152


>30027.m000848 conserved hypothetical protein
          Length = 641

 Score = 50.1 bits (118), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 6/74 (8%)

Query: 53  RFMILSERVQNTDLTDIP------VEKLDELKKLCEIEVVPYSMTLGYSYWSADHILKQI 106
           R ++L ER  +  + D+P      +++  +       E+V   +TL Y+YW  + +L+ +
Sbjct: 299 RLLLLDERYADKRMEDLPRAIKAALQEAMKENSTSTFELVRCKLTLSYNYWQMNEVLEAL 358

Query: 107 LPPGVEIPSSFETI 120
           LP G  IPS+FET+
Sbjct: 359 LPEGAIIPSAFETV 372