Jatropha Genome Database

JcCA0142841.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0142841.20 + phase: 0 /pseudo/partial
         (366 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30174.m008970 conserved hypothetical protein                          199   1e-51

>30174.m008970 conserved hypothetical protein
          Length = 319

 Score =  199 bits (507), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 100/163 (61%), Positives = 119/163 (73%), Gaps = 1/163 (0%)

Query: 171 ESHSEAAGRFNERFLLSLASCKACVVMDDELNILPISSHMRSITPVPVKEDSEGLSEAER 230
           +SHSE   RFNERFLLSLASCKAC+VMDDELNILPISSH++SI    V E  + +   E 
Sbjct: 94  QSHSEVVSRFNERFLLSLASCKACMVMDDELNILPISSHVKSIVAPSVSEGHDSMRTQE- 152

Query: 231 DLKNLKEQLHDDFPVGPLIKRCCTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSXX 290
           +L++LKEQLHD  P GPL+  C TLDQGKAV TFLDAILDK  +ST+AL+++RGRGKS  
Sbjct: 153 ELRSLKEQLHDVLPPGPLLVICTTLDQGKAVSTFLDAILDKAFQSTIALISSRGRGKSAA 212

Query: 291 XXXXXXXXXXXXYSNIFVTAPSPENLKTLFEFICKGFDVLEYK 333
                       YS IFVTAPSPENLK+ F+FIC+G   L Y+
Sbjct: 213 LGLAIAGAIASGYSRIFVTAPSPENLKSPFDFICRGLHALNYE 255