Jatropha Genome Database

JcCA0142031.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0142031.20 + phase: 0 
         (169 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30174.m009019 conserved hypothetical protein                          152   9e-38

>30174.m009019 conserved hypothetical protein
          Length = 175

 Score =  152 bits (383), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 77/118 (65%), Positives = 89/118 (75%)

Query: 49  MAKKILEYRSTFPNQLEVTLASVLSAQRPFLPSMDSGSDLGPAGEFNPGLEEQVNSSKPT 108
           MA +ILEYR+T P+QL+ T AS+LSAQRP LP   SGSD GPAG+ N G+  QV SSK  
Sbjct: 56  MATRILEYRATLPDQLKTTFASILSAQRPILPDFHSGSDPGPAGDSNLGVGWQVKSSKSA 115

Query: 109 SLTEGDQKITEKVRLLKDKISSNVSAMPTVLNRMKECMSKIDNLDSHVGTLHPFSKKK 166
            L E DQK  EKV LLK+KISSNVSAMP VL RMK+C+ KIDNLDS+ G +HP  KKK
Sbjct: 116 LLMEDDQKHAEKVNLLKNKISSNVSAMPIVLKRMKDCLLKIDNLDSNHGIIHPAFKKK 173