Jatropha Genome Database

JcCA0141501.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0141501.10 + phase: 2 /partial
         (103 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29827.m002537 acetylornithine deacetylase, putative                   199   2e-52

>29827.m002537 acetylornithine deacetylase, putative
          Length = 435

 Score =  199 bits (506), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 94/103 (91%), Positives = 100/103 (97%)

Query: 1   IADVKNKLQEYVDDINENIEKLDTRGPVSKYILPDENLRGSLTLTFEEAMSGVACDLESR 60
           + DVKN LQEYVDDINENIEKL TRGPVSKY+LPDENLRGS+TLTFEEAMSGVAC+L+SR
Sbjct: 299 LVDVKNMLQEYVDDINENIEKLGTRGPVSKYVLPDENLRGSITLTFEEAMSGVACNLDSR 358

Query: 61  GFHVLCKATEKVVGHVKPYSITGSLPLIRELQDEGFDVQTAGY 103
           GFHVLCKATEKVVGHVKPYSITGSLPLIRELQ+EGFDVQTAGY
Sbjct: 359 GFHVLCKATEKVVGHVKPYSITGSLPLIRELQEEGFDVQTAGY 401