Jatropha Genome Database

JcCA0141181.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0141181.10 + phase: 0 /partial
         (458 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29794.m003382 retinal pigment epithelium, putative                    730   0.0  
29693.m001992 9-cis-epoxycarotenoid dioxygenase, putative              92   4e-19
30202.m000262 9-cis-epoxycarotenoid dioxygenase, putative              80   2e-15
29904.m002987 9-cis-epoxycarotenoid dioxygenase, putative              72   6e-13
29827.m002661 9-cis-epoxycarotenoid dioxygenase, putative              67   2e-11
29864.m001501 9-cis-epoxycarotenoid dioxygenase, putative              62   5e-10

>29794.m003382 retinal pigment epithelium, putative
          Length = 515

 Score =  730 bits (1884), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/376 (89%), Positives = 362/376 (96%)

Query: 1   KGTYLRNGPGLWHIGDYKFRHLFDGYATLVKLHFENGRLMAGHRQVESEAYKAAKKNKKL 60
           KGTYLRNGPGLWHI +Y FRHLFDGYATLVKLHFENGRL+AGHRQ++SEAYKAAK+NKKL
Sbjct: 90  KGTYLRNGPGLWHIENYNFRHLFDGYATLVKLHFENGRLIAGHRQIQSEAYKAAKRNKKL 149

Query: 61  CYREFSEAPKPDNFLAYIGDLANLFSGASLTDNANTGVVKLGDGRVVCLTETQKGSIIID 120
           CYREFSE PKPDNFL+YIGDLANLFSGASLTDNANTGV+KLGDGRVVCLTETQKGSII+D
Sbjct: 150 CYREFSEVPKPDNFLSYIGDLANLFSGASLTDNANTGVIKLGDGRVVCLTETQKGSIIVD 209

Query: 121 PDTLDTIGKFEFTDSLGGLIHSAHPIVTDTEFLTLLPDLIRPGYLVVRMAPGSNERKVIG 180
           P+TLDTIGKFE++DSLGGLIHSAHPIVTD+EFLTLLPDL++PGYLVVRM PGSNERKVIG
Sbjct: 210 PETLDTIGKFEYSDSLGGLIHSAHPIVTDSEFLTLLPDLLKPGYLVVRMEPGSNERKVIG 269

Query: 181 RVDCRGGPAPGWVHSFPVTEHYVIVPEMPLRYCAANLLKAEPTPLYKFEWHPDSKAFMHV 240
           RVDCR GPAPGWVHSFPVTEHY+IVPEMPLRYCA NLL+AEPTPLYKFEWHP+SK F+HV
Sbjct: 270 RVDCRSGPAPGWVHSFPVTEHYIIVPEMPLRYCAQNLLRAEPTPLYKFEWHPESKGFVHV 329

Query: 241 MCKASGKIVASVEVPLYVTFHFINAYEEKDEDGRVKAVIADCCEHSADTTILEKLRLQNL 300
           MCKASGK VASVEVPL+VTFHFINAYEE+DEDGRV AVIADCCEH+ADT+ILEKLRLQNL
Sbjct: 330 MCKASGKTVASVEVPLFVTFHFINAYEERDEDGRVTAVIADCCEHNADTSILEKLRLQNL 389

Query: 301 RSFGGVDVLPDARVGRFTIPLDGSPYGKLEAALDPDEHGRGMDMCSFNPSFLGKKYRYAY 360
           RSF G DVLPDARVGRF IPLDGSPYGKLEAALDPDEHGRGMDMCS NP+FLG +YRYAY
Sbjct: 390 RSFMGADVLPDARVGRFIIPLDGSPYGKLEAALDPDEHGRGMDMCSINPAFLGIEYRYAY 449

Query: 361 ACGAQRPCNFPNTLTK 376
           ACGAQRPCNFPNTLTK
Sbjct: 450 ACGAQRPCNFPNTLTK 465


>29693.m001992 9-cis-epoxycarotenoid dioxygenase, putative
          Length = 607

 Score = 92.4 bits (228), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 122/484 (25%), Positives = 201/484 (41%), Gaps = 74/484 (15%)

Query: 2   GTYLRNG--PGLWHIGDYKFRHLFDGYATLVKLHFENGRLMAGHRQVESEAYKAAKKNKK 59
           G Y+RNG  P    I  +   HLFDG   +  +  +NG      R  E+E  K  +   +
Sbjct: 159 GVYVRNGANPLFEPIAGH---HLFDGDGMVHAVSIKNGNASYACRFTETERLKQERVLGR 215

Query: 60  LCYRE-----FSEAPKPDNFLAYIGDLANLFSGASLTDNANTGVVKLGDGRVVCLTETQ- 113
             + +        +      L Y   L  L      T  AN G+V   D R++ ++E   
Sbjct: 216 PVFPKAIGELHGHSGIARLLLFYARGLCGLIDHTKGTGVANAGLVYFND-RLLAMSEDDV 274

Query: 114 --KGSIIIDPDTLDTIGKFEFTDSLGGLIHS--AHPIV--TDTEFLTLLPDLIRPGYL-V 166
             +  +    D L+T+G++ F    G L H+  AHP +     E   L  D+I+  YL  
Sbjct: 275 PYQVRVTFSGD-LETVGRYNFE---GQLEHTMIAHPKIDPVSKEMFALSYDVIQKPYLKY 330

Query: 167 VRMAPGSNERKVIGRVDCRGGPAPGWVHSFPVTEHYVIVPEMPLRYCAANLLKAEPTPLY 226
            R  P   +      VD    P P  +H F +TE++V++P+  + +    ++      +Y
Sbjct: 331 FRFFPDGTKSP---DVDI-PLPVPTMMHDFAITENFVVIPDQQVVFKLQEMISGGSPVIY 386

Query: 227 KFEWHPDSKAFMHVMCKAS--GKIVASVEVPLYVTFHFINAYEEKDEDGRVKAVIADC-- 282
                 D K+   ++ K +     +  +E P    FH  NA+EE + D  V  VI  C  
Sbjct: 387 D----KDKKSRFGILAKNARDANDIIWIESPDTFCFHLWNAWEEPESDEVV--VIGSCMT 440

Query: 283 --------CEHSADTTILEKLRLQNLRSFGGVDVLPDARVGRFTIPLDGSPYGKLEAALD 334
                   C+ S   ++L ++RL NLR+          +  R  I +  S    LEA + 
Sbjct: 441 PPDSIFNECDESL-KSVLSEIRL-NLRT---------GKSTRREI-IQESNQVNLEAGM- 487

Query: 335 PDEHGRGMDMCSFNPSFLGKKYRYAYACGAQRPCNFPNTLTKIDLVKKKAKNW-HDEGAV 393
                        N + +G+K RY Y    + P    +   K+DL   + K + + +   
Sbjct: 488 ------------VNRNRIGRKTRYVYLAIVE-PWPKVSGFAKVDLFTGEVKKYIYGDKKF 534

Query: 394 PSEPLFVTR-PGATEEDDGVVISII-SEKNGDGYALLLDGSTFEEIARAKFPYGLPYGLH 451
             EP F+ R P + EEDDG V++ +  EK       +++ +  +  A  K P  +PYG H
Sbjct: 535 GGEPFFLPRDPNSEEEDDGYVLAFVHDEKKCKSELQIVNATNLQLEASVKLPSRVPYGFH 594

Query: 452 GCWV 455
           G ++
Sbjct: 595 GTFI 598


>30202.m000262 9-cis-epoxycarotenoid dioxygenase, putative
          Length = 603

 Score = 79.7 bits (195), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 115/487 (23%), Positives = 195/487 (40%), Gaps = 80/487 (16%)

Query: 2   GTYLRNGPGLWHIGDYKFRHLFDGYATLVKLHFENGRLMAGHRQVESEAYKAAKKNKKLC 61
           G Y+RNG    H       H FDG   +  + FE G  +       S A +  + N+ + 
Sbjct: 155 GVYIRNGANPLH-EPVAGHHFFDGDGMVHAVQFEKGGSV-------SYACRFTETNRFVQ 206

Query: 62  YREFSEAPKPDN-------------FLAYIGDLANLFSGASLTDNANTGVVKLGDGRVVC 108
            RE      P                L Y   L  L   +  T  AN G+V   +GR++ 
Sbjct: 207 ERELGRPVFPKAIGELHGHSGIARLLLFYARGLVGLVDPSHGTGVANAGLVYF-NGRLLA 265

Query: 109 LTETQ--KGSIIIDPDTLDTIGKFEFTDSLGGLIHSAHPIV--TDTEFLTLLPDLIRPGY 164
           ++E        ++    L T+ +++F   L   +  AHP V     E   L  D+++  +
Sbjct: 266 MSEDDLPYHVRVLPSGDLKTVARYDFDAQLKSTM-IAHPKVDPVSGELFALSYDVVQKPF 324

Query: 165 L-VVRMAP-GSNERKVIGRVDCRGGPAPGWVHSFPVTEHYVIVPEMPLRYCAANLLKAEP 222
           L   R +P G     V   +D      P  +H F +TE++V+VP+  + +    +++   
Sbjct: 325 LKYFRFSPDGKKSPDVEISLD-----QPTMMHDFAITENFVVVPDQQVVFKLPEMIRGGS 379

Query: 223 TPLYKFEWHPDSKAFMHVMCKAS--GKIVASVEVPLYVTFHFINAYEEKDEDGRVKAVIA 280
             +Y      +  +   ++ K S  G  +  +E P    FH  NA+EE + D  V  V+ 
Sbjct: 380 PVIYD----KNKMSRFGILDKNSNDGSKIKWIEAPDCFCFHLWNAWEEPETDEVV--VVG 433

Query: 281 DC----------CEHSADTTILEKLRLQNLRSFGGVDVLPDARVGRFTIPLDGSPYGKLE 330
            C          CE S   ++L ++RL NL++          +  R  I +       LE
Sbjct: 434 SCMTPPDSIFNECEESLK-SVLSEIRL-NLKT---------GKSTRRAI-ISQHEQVNLE 481

Query: 331 AALDPDEHGRGMDMCSFNPSFLGKKYRYAYACGAQRPCNFPNTLTKIDLVKKKAKNW-HD 389
           A            M S N   LG+K R+AY   A+ P    +   K+DL   +   + + 
Sbjct: 482 AG-----------MVSRN--LLGRKTRFAYLALAE-PWPKVSGFAKVDLNTGEVHKYVYG 527

Query: 390 EGAVPSEPLFVTRPGATEEDDGVVISII-SEKNGDGYALLLDGSTFEEIARAKFPYGLPY 448
           +     EP+F+    + +ED G ++  +  EK       +++    +  A  K P  +PY
Sbjct: 528 DSKYGGEPMFLPSSDSAQEDSGYILCFVHDEKEWKSELQIVNAMNLKLEATVKLPSRVPY 587

Query: 449 GLHGCWV 455
           G HG ++
Sbjct: 588 GFHGTFI 594


>29904.m002987 9-cis-epoxycarotenoid dioxygenase, putative
          Length = 618

 Score = 71.6 bits (174), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 116/496 (23%), Positives = 204/496 (41%), Gaps = 77/496 (15%)

Query: 1   KGTYLRNG--PGLWHIGDYKFRHLFDGYATL--VKLHFENGRLMAGHRQVESEAYKAAKK 56
           +G YLRNG  P     G +   HLFDG   +  V L +EN       R   S  +    +
Sbjct: 148 RGVYLRNGANPVYAPTGGH---HLFDGDGMVHAVTLGYEN-------RASYSCRFTRTSR 197

Query: 57  NKKLCYREFSEAPKPDNFLAYIGDLANLF-----SGASLTDNAN-TGVVKLG----DGRV 106
            ++      S  PKP   L      A L      +G  L D +  TGV   G    +GR+
Sbjct: 198 LEQEAALGRSVFPKPIGELHGHLGFARLLIFMVRAGIGLVDGSRGTGVANAGLVYFNGRL 257

Query: 107 VCLTETQ---KGSIIIDPDTLDTIGKFEFTDSLGGLIHSAHPIV--TDTEFLTLLPDLIR 161
           + ++E        I  D D L+TI +F F D L   +  AHP V     E   L  ++++
Sbjct: 258 LAMSEDDLPYHVKIKGDGD-LETIKRFSFDDQLDCPM-IAHPKVDPVTGELHALSYNVVQ 315

Query: 162 PGYLVVRMAPGSNERKVIGRVDCRGGPAPGWVHSFPVTEHYVIVPEMPLRYCAANLLKAE 221
             YL         ++     +       P  +H F VT ++V++P+  + +  + +++  
Sbjct: 316 KPYLKYFKFDKYGKKSRDLDITLH---QPTMIHDFAVTRNFVVIPDHQVVFKLSEMIRGG 372

Query: 222 PTPLYKFEWHPDSKAFMHVMCKASGKIVASVEVPLYVTFHFINAYEEKDEDGRVKAVIAD 281
              +Y  + +  S+  +    + +   +  +EVP    FH  N++EE   +G    V+  
Sbjct: 373 SPVIY--DKNKTSRFGILSKNEVNESGIQWIEVPNCFCFHLWNSWEEISTNGDKIIVVIG 430

Query: 282 CCEHSADTTILE-KLRLQNLRSFGGVDVLPDARVGRFTIPLDGSPYGKLEAALDPDEHGR 340
            C +  D+   E +  +Q+         L + R+   T           E+       G 
Sbjct: 431 SCMNPPDSIFNESETAIQS--------ELSEIRLNMRT----------RESTRKAIVRGM 472

Query: 341 GMDMCSFNPSFLGKKYRYAYACGAQRPCNFPNTLTKIDL-VKKKAKNWHDEGAVPSEPLF 399
            ++    N  F+G+K RY Y   A+ P    + + K+DL  K+  K  + +G    EP F
Sbjct: 473 NLEAGQVNRKFVGQKTRYVYLAIAE-PWPKCSGIAKVDLETKEVTKFMYGKGRYGGEPFF 531

Query: 400 VTRPGATEEDDGV------VISIISEKNGDGYAL--------------LLDGSTFEEIAR 439
           V +    EE++        + ++I+++ G+GY +              +++ +  E++A 
Sbjct: 532 VAKNREGEEEEDDDDDGKKIGNVINDEEGEGYIMGFVRDEIKERSELVIVNATGMEQVAS 591

Query: 440 AKFPYGLPYGLHGCWV 455
              P  +PYG HG +V
Sbjct: 592 VSLPTRVPYGFHGTFV 607


>29827.m002661 9-cis-epoxycarotenoid dioxygenase, putative
          Length = 618

 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 113/486 (23%), Positives = 190/486 (39%), Gaps = 74/486 (15%)

Query: 2   GTYLRNGPGLWHI--GDYKFRHLFDGYATLVKLHFENGRLMAGHRQVESEAYKAAK-KNK 58
           G Y+RNGP   ++  G Y   HLFDG   L  +    G+     R V++  Y   +    
Sbjct: 167 GAYIRNGPNPQYLPRGPY---HLFDGDGMLHSIRISQGKATLCSRYVKTYKYTMERDAGA 223

Query: 59  KLCYREFS-----EAPKPDNFLAYIGDLANLFSGASLTDNANTGVVKLGDGRVVCLTETQ 113
            L    FS      A      L+    L+  F+  +    ANT +   G+ R+  L E+ 
Sbjct: 224 PLLPNVFSGFNGLAASATRGALSAARILSGQFNPVNGIGLANTSLAFFGN-RLYALGESD 282

Query: 114 ---KGSIIIDPDTLDTIGKFEFTDSLGGLIHSAHPIV--TDTEFLTLLPDLIRPGYLVVR 168
                 + ++ D ++T+G+ +F   L  +  +AHP +     E        + P     R
Sbjct: 283 LPYTVRLTLNGD-IETLGRHDFEGKLF-MSMTAHPKIDLETGEAFAFRYGPVPPFLTYFR 340

Query: 169 MAPGSNERKVIGRVDCRGGPAPGWVHSFPVTEHYVIVPE-------MPLRYCAANLLKAE 221
                N++     V       P ++H F +++ Y I  +       M + +   + + A+
Sbjct: 341 FDSKGNKQP---DVPIFSMVRPSFLHDFAISKKYAIFADIQIVMNPMDMIFGGGSPVGAD 397

Query: 222 PTPLYKFEWHPDSKAFMHVMCKASGKIVASVEVPLYVTFHFINAYEEKDEDGRVKAVIAD 281
           PT + +    P          K   ++    +VP +   H INA++E+D    +   I  
Sbjct: 398 PTKVPRLGIIPR-------YAKDESEM-RWFDVPGFNLIHAINAWDEEDAIVMLAPNIL- 448

Query: 282 CCEHSADTTILEKLRLQNLRSFGGVDVLPDARVGRFTIPLDGSPYGKLEAALDPDEHGRG 341
             EH+ +   L    ++ +R         D + G  T     +P              R 
Sbjct: 449 SVEHTLERMELVHALVEKVRI--------DLKTGIVT----RNPVS-----------ARN 485

Query: 342 MDMCSFNPSFLGKKYRYAYACGAQRPCNFPNTLTKIDLVK------KKAKNWHDEGAVPS 395
           +D    NP+++GKK RY YA     P    + + K+D+ K        A           
Sbjct: 486 LDFAVINPAYIGKKNRYVYAAIGD-PMPKISGVVKLDVSKGDRQECTVASRMFGPKCYGG 544

Query: 396 EPLFVTRPGAT---EEDDGVVISII-SEKNGDGYALLLDGST--FEEIARAKFPYGLPYG 449
           EP FV R       EEDDG V+S +  E  G+   L++D  +   + +A  + P  +PYG
Sbjct: 545 EPFFVAREPDNIDAEEDDGFVVSYVHDEIAGESKFLVMDARSPNLDIVAAVRLPRRVPYG 604

Query: 450 LHGCWV 455
            HG +V
Sbjct: 605 FHGLFV 610


>29864.m001501 9-cis-epoxycarotenoid dioxygenase, putative
          Length = 536

 Score = 62.0 bits (149), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 71/288 (24%), Positives = 120/288 (41%), Gaps = 45/288 (15%)

Query: 190 PGWVHSFPVTEHYVIVPEMPLRYCAANLLKAEPTPLYKFEWHPDSKAFMHVMCKASGKIV 249
           P  +H F +TE+Y I  ++P+ +    ++K E   +Y F+    ++  +        + +
Sbjct: 261 PIMMHDFAITENYAIFLDLPMYFRPKEMVK-EKKLIYTFDATKKARFGVLPRYAKDDREM 319

Query: 250 ASVEVPLYVTFHFINAYEEKDEDGRVKAVIADCCEHSADTTILE---KLRLQNLRSFGGV 306
              E+P    FH  NA+EE+DE      V+  C   + D  ++    K +L+N ++    
Sbjct: 320 RWFELPNCFIFHNANAWEEEDE-----VVLITCRLENPDLNMVSGTVKGKLENFKN---- 370

Query: 307 DVLPDARVGRFTIPLDGSPYGKLEAALDPDEHGRGMDMCSFNPSFLGKKYRYAYACGAQR 366
               +    RF +        K   AL        +D    N S+ G+K R+ Y      
Sbjct: 371 ----ELYEMRFNM--------KTGMALQKKLSVSAVDFPRVNESYTGRKQRFVYGTILDS 418

Query: 367 PCNFPNTLTKIDL------------VKKKAKNWHD--EGAVPSEPLFVTR-PG-ATEEDD 410
                  + K DL            V    K   D   G   SE +FV R PG ++EEDD
Sbjct: 419 IAKVTGVI-KFDLHAEPQLDKKKLEVGGNVKGIFDLGPGRFGSEAVFVPREPGTSSEEDD 477

Query: 411 GVVISIISEKN-GDGYALLLDGSTF--EEIARAKFPYGLPYGLHGCWV 455
           G +I  + ++N G     ++D  T   + +A  + P+ +PYG H  +V
Sbjct: 478 GYLILFVYDENTGKSSVNVIDAKTMSADPVAVIELPHRVPYGFHAFFV 525