Jatropha Genome Database

JcCA0141021.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0141021.10 - phase: 0 
         (135 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29711.m000323 triosephosphate isomerase, putative                     161   1e-40
30028.m000254 triosephosphate isomerase, putative                      50   3e-07
27383.m000156 triosephosphate isomerase, putative                      48   1e-06

>29711.m000323 triosephosphate isomerase, putative
          Length = 313

 Score =  161 bits (407), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 85/104 (81%), Positives = 89/104 (85%), Gaps = 10/104 (9%)

Query: 1   MAMLSTSLAGPKSSYCAAPQFSGLRRSCPKLESTNSHSLSQSFLRHFNSQLR-VPSSRKP 59
           MAMLSTSL+GP        QFSGLR+SCPKL  T  HSLSQSFLRHFNSQLR + SSRKP
Sbjct: 1   MAMLSTSLSGPS-------QFSGLRQSCPKLLET--HSLSQSFLRHFNSQLRSISSSRKP 51

Query: 60  SGHVVAMAGTGTFFVGGNWKCNGTKESITKLVSDLNDAKLEADV 103
           S HVVAMAGTGTFFVGGNWKCNGTKESI+KLVSDLNDAKLEADV
Sbjct: 52  SRHVVAMAGTGTFFVGGNWKCNGTKESISKLVSDLNDAKLEADV 95


>30028.m000254 triosephosphate isomerase, putative
          Length = 118

 Score = 50.1 bits (118), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 26/31 (83%)

Query: 72  FFVGGNWKCNGTKESITKLVSDLNDAKLEAD 102
           FFVGGNWKCNGT E + K+V+ LN+A++ +D
Sbjct: 5   FFVGGNWKCNGTTEEVKKIVTTLNEAEVPSD 35


>27383.m000156 triosephosphate isomerase, putative
          Length = 254

 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/46 (52%), Positives = 30/46 (65%), Gaps = 6/46 (13%)

Query: 72  FFVGGNWKCNGTKESITKLVSDLNDAKL-EADVGERIF-----FLP 111
           FFVGGNWKCNGT E + K+VS LN+  +  +DV E +      FLP
Sbjct: 5   FFVGGNWKCNGTSEEVKKIVSTLNEGHVPSSDVVEVVISPPFVFLP 50