Jatropha Genome Database

JcCA0140901.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0140901.10 + phase: 0 /pseudo/partial
         (99 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29709.m001188 casein kinase II beta chain, putative                    96   3e-21
29822.m003509 casein kinase II beta chain, putative                    47   2e-06

>29709.m001188 casein kinase II beta chain, putative
          Length = 338

 Score = 96.3 bits (238), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 53/76 (69%), Positives = 58/76 (76%), Gaps = 6/76 (7%)

Query: 1  MYKDXXXXXXXXXXXEIERKRINDALDKHLEKSSPSTSRALNNKDKDRLSVPSTSAGKSQ 60
          MYKD           E++RKRINDALDKHLEK SPSTSR LN+KDK+RLSVPSTS GKSQ
Sbjct: 1  MYKDRGGGSSRS---EMDRKRINDALDKHLEKLSPSTSRTLNSKDKERLSVPSTSTGKSQ 57

Query: 61 LDHRDPRSASLSKNKC 76
           DH   RSAS+SKNKC
Sbjct: 58 FDH---RSASISKNKC 70


>29822.m003509 casein kinase II beta chain, putative
          Length = 259

 Score = 47.0 bits (110), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/44 (52%), Positives = 29/44 (65%)

Query: 17 IERKRINDALDKHLEKSSPSTSRALNNKDKDRLSVPSTSAGKSQ 60
          ++RKRINDALDKH+E+SSPSTS  +  KD     V      +SQ
Sbjct: 16 VDRKRINDALDKHIERSSPSTSTLIKGKDYKSFLVGKQHQQQSQ 59